Comparing Echvi_2841 FitnessBrowser__Cola:Echvi_2841 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
Q39232 Sucrose transport protein SUC1; AtSUC1; Sucrose permease 1; Sucrose-proton symporter 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
28% identity, 88% coverage: 24:419/451 of query aligns to 42:472/513 of Q39232
>Echvi_2841 FitnessBrowser__Cola:Echvi_2841
MQAQIEKKKLSFWQIWNMSFGFLGIQMGFALQNANASRILQTFGADVEHLSLFWLVAPIT
GMIIQPIIGHYSDRTWTKLGRRRPYFLAGAVLAAIGLVLMPNASLFVAYLPALWVGAGFL
MIMDASFNVAMEPFRALVADKLPTDQRTLGFAVQTLLIGLGAVIGSWLPYVLTEWFSIPT
TANEGIVPQNVLWAFIIGATILVASILWTVLRTSEYPPDELEKSAHKIDKNAQRGLSSIF
TDFIKMPKTMKQLGLVQFFSWFALFSMWVFSTPALAQHVWGLPSSDRSSLEFNEAGNYVG
VIFGVYNLVSALFAMTLPVIAAKIGRKMTHAICLLIGGTGLISILWVTDPEMKWVLNLSM
IGVGIAWASILAMPYAILAGSIPAKKMGVYMGIFNFFITAPQILNGFIGGWIVRYIYGGQ
AIYALFSAGLFLILAAMLTYFVEDKDDGAIA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory