SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Echvi_2937 FitnessBrowser__Cola:Echvi_2937 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

7bywA Crystal structure of acidovorax avenae l-fucose mutarotase (l-fucose- bound form) (see paper)
29% identity, 98% coverage: 3:110/110 of query aligns to 1:107/108 of 7bywA

query
sites
7bywA
K
 
Q
R
 
R
Y
 
M
T
 
G
M
 
M
A
 
V
L
 
I
D
 
G
L
 
I
K
 
K
D
 
-
D
 
-
P
 
P
T
 
E
L
 
H
I
 
I
A
 
D
E
 
E
Y
|
Y
E
 
K
K
 
R
F
 
L
H
|
H
Q
 
A
A
 
A
V
 
V
W
 
W
P
 
P
E
 
A
I
 
V
Q
 
L
K
 
A
S
 
R
I
 
L
K
 
A
D
 
E
A
 
A
G
 
H
I
 
V
E
 
R
V
 
N
M
x
Y
E
 
S
I
 
I
Y
 
F
-
 
L
-
 
R
R
 
E
W
 
P
E
 
E
N
 
N
R
 
L
L
 
L
F
 
F
M
 
G
I
 
Y
M
 
W
E
 
E
-
 
Y
T
 
H
T
 
G
E
 
T
D
 
D
F
 
Y
S
 
A
F
 
A
E
 
D
K
 
M
K
 
E
A
 
A
A
 
I
M
 
-
D
 
-
A
 
A
A
 
Q
N
 
D
P
 
P
K
 
E
V
 
T
R
 
R
E
 
R
W
|
W
E
x
W
D
 
T
L
 
F
M
 
C
W
 
G
T
 
P
Y
 
C
Q
 
Q
Q
 
E
G
 
P
L
 
L
P
 
A
G
 
S
V
 
R
P
 
Q
E
 
P
G
 
G
E
 
E
K
 
H
W
 
W
Q
 
A
V
 
H
M
 
M
N
 
E
K
 
E
I
 
V
F
 
F
E
 
H
L
 
V

Query Sequence

>Echvi_2937 FitnessBrowser__Cola:Echvi_2937
MTKRYTMALDLKDDPTLIAEYEKFHQAVWPEIQKSIKDAGIEVMEIYRWENRLFMIMETT
EDFSFEKKAAMDAANPKVREWEDLMWTYQQGLPGVPEGEKWQVMNKIFEL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory