SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Echvi_3072 FitnessBrowser__Cola:Echvi_3072 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4i6vB The crystal structure of an amidohydrolase 2 from planctomyces limnophilus dsm 3776
23% identity, 44% coverage: 38:247/481 of query aligns to 18:211/430 of 4i6vB

query
sites
4i6vB
E
 
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Q
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K

Sites not aligning to the query:

Query Sequence

>Echvi_3072 FitnessBrowser__Cola:Echvi_3072
MLDEVSNRLRKTKKTFLSEDFLLQSEFAQVLYHDYAKELPIIDYHCHLSPKDITENRTFK
NLTEIWLAGDHYKWRAMRTLGIDEKYITGKGSTDQEKFQKWAETVPYTLRNPLYHWTHLE
LKRYFGIEELLSPDTADDIYQKATDMLQQPSHHTRGLLSQMNVETVCSTDDPIDSLEYHI
KAKKEGIQPNLFPAFRPDKAYAVENPADYMAYLEKLQEASGVTISKYGDLLAALENQIAF
FHEHGGRLSDHGLEQLYFFKLGQYSAEDLFQKLSEQKALSNEEIQYFKFETLLHLSHMYH
AKGWTQQYHLGALRNTNERMLRVLGPDTGFDSIGDYSQAEALAKFLNQLDSTDQLTKTIL
YNLNPRDNEVLATMIGNFNDGSIRGKVQFGSGWWFLDQKDGMEKQLNALSNMGLLSCFVG
MLTDSRSFLSFPRHEYFRRTLCNLIGRDVENGELPADEKWLGKIVSDICYYNAKNYFEFE
Q

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory