SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Echvi_3627 Echvi_3627 TRAP transporter, DctM subunit to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
39% identity, 95% coverage: 20:428/431 of query aligns to 15:421/427 of 8b01B

query
sites
8b01B
G
 
G
V
 
M
P
 
P
V
 
V
A
 
G
W
 
F
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S
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L
G
 
I
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G
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L
L
 
A
T
 
F
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L
M
 
V
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L
T
 
T
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E
A
 
S
A
 
T
V
 
-
P
 
-
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G
M
 
I
T
 
N
T
 
F
I
 
A
A
 
A
Q
 
Q
R
 
Q
M
 
M
G
 
I
A
 
G
G
 
G
L
 
L
N
 
D
S
 
N
F
 
F
S
 
T
L
 
L
L
 
L
A
 
A
I
 
V
P
 
P
F
 
F
F
 
F
I
 
V
L
 
L
A
 
T
G
 
G
E
 
H
I
 
L
M
 
M
N
 
N
K
 
S
G
 
A
G
 
G
I
 
I
A
 
T
N
 
E
R
 
R
L
 
I
I
 
F
N
 
N
L
 
F
A
 
A
K
 
K
A
 
A
L
 
M
T
 
V
G
 
G
K
 
H
L
 
I
P
 
T
G
 
G
G
 
S
L
 
L
L
 
G
Y
 
H
V
 
V
N
 
N
V
 
I
I
 
L
A
 
A
A
 
S
M
 
L
L
 
L
F
 
F
G
x
S
A
 
G
I
 
M
A
x
S
G
|
G
S
 
S
A
 
A
V
 
L
A
 
A
A
 
D
A
 
A
S
 
G
A
 
G
L
 
L
G
 
G
G
 
Q
I
 
L
L
 
E
G
 
I
K
 
K
R
 
S
M
 
M
E
 
R
D
 
D
E
 
A
G
 
K
Y
 
Y
P
 
D
K
 
D
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D
L
 
F
G
 
A
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G
A
 
G
V
 
L
N
 
T
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A
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A
S
 
S
S
 
C
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I
T
 
I
G
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G
L
 
P
V
 
L
I
x
V
P
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P
P
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P
S
 
S
N
 
I
V
 
P
L
 
L
I
 
V
V
 
I
Y
 
Y
S
 
G
L
 
V
A
 
V
S
 
S
G
 
N
G
 
-
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T
S
 
S
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I
A
 
G
A
 
A
L
 
L
F
 
F
V
 
L
A
 
A
G
 
G
Y
 
A
I
 
I
P
 
P
G
 
G
L
 
L
F
 
L
M
 
C
G
 
C
L
 
I
L
 
A
L
 
L
M
 
C
L
 
I
T
 
M
A
 
T
A
 
-
Y
 
Y
F
 
F
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I
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A
K
 
K
K
 
K
K
 
R
L
 
G
P
 
Y
A
 
M
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T
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L
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P
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R
-
 
A
S
 
S
F
 
R
K
 
K
E
 
E
L
 
R
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L
K
 
I
V
 
A
F
 
F
F
 
R
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D
A
 
A
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F
P
 
L
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S
L
 
L
T
 
L
L
 
T
L
 
P
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F
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I
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I
I
 
I
G
 
G
G
 
G
I
 
I
V
 
F
M
 
S
G
 
G
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K
F
 
F
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T
A
 
P
T
 
T
E
 
E
A
 
A
S
 
A
A
 
I
I
 
I
A
 
S
V
 
S
L
 
L
Y
 
Y
C
 
A
L
 
L
G
 
F
L
 
L
-
 
G
S
 
T
F
 
V
F
 
V
Y
 
Y
G
 
K
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S
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L
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M
R
 
D
D
 
K
L
 
F
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I
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K
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L
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V
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Q
K
 
E
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T
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A
 
T
T
 
T
T
 
T
A
 
S
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V
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V
A
 
A
M
 
L
L
 
M
I
 
V
A
 
M
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G
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T
A
 
V
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F
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G
W
 
W
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V
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A
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R
E
 
E
D
 
Q
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L
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P
Q
 
Q
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Q
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L
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A
A
 
E
V
 
L
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F
L
 
L
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S
L
 
I
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S
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D
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N
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P
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L
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I
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L
L
 
L
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L
I
 
L
I
 
I
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N
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L
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L
L
 
L
L
 
L
F
 
F
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L
G
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G
I
x
T
F
 
F
M
 
I
D
 
E
M
 
S
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L
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A
A
 
L
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L
L
 
L
I
 
L
F
 
L
T
 
V
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P
I
 
F
F
 
L
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V
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P
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V
V
 
A
T
 
T
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S
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V
G
 
G
I
 
I
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D
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P
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V
H
 
H
F
 
F
G
 
G
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V
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M
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A
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I
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L
N
 
N
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L
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M
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I
G
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L
x
I
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P
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P
V
x
M
G
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G
S
 
M
V
 
A
L
 
L
F
 
Y
I
 
V
G
 
V
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S
G
 
K
V
 
V
A
 
G
K
 
N
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I
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P
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F
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H
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V
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L
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T
K
 
R
P
 
G
L
 
V
L
 
L
P
 
P
F
 
L
F
 
L
I
 
V
A
 
P
M
 
L
I
 
F
I
 
I
G
 
V
L
 
L
A
 
G
V
 
L
I
 
I
T
 
I
I
 
V
W
 
F
P
 
P
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Q
L
 
I
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T
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L
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F
L
 
L
P
 
P
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Q
L
 
L

Query Sequence

>Echvi_3627 Echvi_3627 TRAP transporter, DctM subunit
MEYITIIILVLSFITLMGLGVPVAWSLGFSSLLTLMVTVAAVPSMTTIAQRMGAGLNSFS
LLAIPFFILAGEIMNKGGIANRLINLAKALTGKLPGGLLYVNVIAAMLFGAIAGSAVAAA
SALGGILGKRMEDEGYPKELGVAVNVTSSTTGLVIPPSNVLIVYSLASGGVSIAALFVAG
YIPGLFMGLLLMLTAAYFIKKKKLPAGEPTSFKELGKVFFSAAPSLTLLVIVIGGIVMGV
FTATEASAIAVLYCLGLSFFYGELKPRDLPAILLKSSATTAVVAMLIATSMAMSWVMSSE
DIPQSISAVLLSLSDNKFVILIIINLILLFVGIFMDMTPAVLIFTPIFLPVVTELGIDPV
HFGIIMVLNLCIGLCTPPVGSVLFIGVGVAKTSISNVVKPLLPFFIAMIIGLAVITIWPQ
LTLWLPSLFGL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory