Comparing GFF1001 FitnessBrowser__WCS417:GFF1001 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 2 hits to proteins with known functional sites (download)
4rqoB Crystal structure of l-serine dehydratase from legionella pneumophila (see paper)
56% identity, 100% coverage: 1:458/458 of query aligns to 1:448/448 of 4rqoB
2iafA Crystal structure of a fragment (residues 11 to 161) of l-serine dehydratase from legionella pneumophila
47% identity, 29% coverage: 17:151/458 of query aligns to 1:132/140 of 2iafA
>GFF1001 FitnessBrowser__WCS417:GFF1001
MAISVFDLFKVGIGPSSSHTVGPMRAAATFAQALIDQQLLSQTRRVEVRLYGSLSATGVG
HATDRACVMGLMGEWPDRVDPTSINARIQQLRESGRLLLAGLQDIAFNWQQDLRLLDESL
PYHPNAMSLHAYGENGLLSEQTYYSVGGGFIIEAAEAASGIAPTSDVQLPYDFSSAVELL
ALCNKHGLRVSELMMANERAWRSDADIRSGLLHIWSVMRECVEQGLRDEGILPGGLDVPR
RAAKLHRSLLEIGKPNVITSTLSAMEWVNLFALAVNEENAAGGRMVTAPTNGAAGIIPAV
LHYYMKFNAEASDDDVVNFFLAAAAVGILCKKNASISGAEVGCQGEVGSACAMAAAGLAD
VLGATPEQLENAAEIGLEHNLGLTCDPVGGLVQVPCIERNAIAAVKAINATQMALRGDGK
HFISLDRVIRTMRDTGADMHDKYKETSRGGLAVSWVEC
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory