Comparing GFF1041 FitnessBrowser__psRCH2:GFF1041 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
7ug8B Crystal structure of a solute receptor from synechococcus cc9311 in complex with alpha-ketovaleric and calcium
32% identity, 89% coverage: 34:354/361 of query aligns to 4:324/330 of 7ug8B
2hzlB Crystal structures of a sodium-alpha-keto acid binding subunit from a trap transporter in its closed forms (see paper)
32% identity, 88% coverage: 32:347/361 of query aligns to 1:316/337 of 2hzlB
Q3J1R2 Alpha-keto acid-binding periplasmic protein TakP; Extracytoplasmic solute receptor protein TakP; TRAP transporter alpha-keto acid-binding subunit P; TRAP-T family sorbitol/mannitol transporter, periplasmic binding protein, SmoM from Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.) (Rhodobacter sphaeroides) (see paper)
32% identity, 87% coverage: 34:347/361 of query aligns to 31:344/365 of Q3J1R2
4yicA Crystal structure of a trap transporter solute binding protein (ipr025997) from bordetella bronchiseptica rb50 (bb0280, target efi- 500035) with bound picolinic acid
30% identity, 91% coverage: 31:360/361 of query aligns to 1:330/344 of 4yicA
5cm6A Crystal structure of a trap periplasmic solute binding protein from pseudoalteromonas atlantica t6c(patl_2292, target efi-510180) with bound sodium and pyruvate
31% identity, 87% coverage: 33:347/361 of query aligns to 1:316/331 of 5cm6A
4petA Crystal structure of a trap periplasmic solute binding protein from colwellia psychrerythraea (cps_0129, target efi-510097) with bound calcium and pyruvate (see paper)
29% identity, 88% coverage: 33:350/361 of query aligns to 2:320/329 of 4petA
Q5SK82 Lactate-binding periplasmic protein TTHA0766; ABC transporter, solute-binding protein; Extracytoplasmic solute receptor protein TTHA0766; TRAP transporter lactate-binding subunit P from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
27% identity, 98% coverage: 1:353/361 of query aligns to 4:351/361 of Q5SK82
Sites not aligning to the query:
2zzwA Crystal structure of a periplasmic substrate binding protein in complex with zinc and lactate (see paper)
27% identity, 89% coverage: 33:353/361 of query aligns to 1:320/330 of 2zzwA
2zzvA Crystal structure of a periplasmic substrate binding protein in complex with calcium and lactate (see paper)
27% identity, 89% coverage: 33:353/361 of query aligns to 1:320/330 of 2zzvA
4pe3A Crystal structure of a trap periplasmic solute binding protein from rhodobacter sphaeroides (rsph17029_3620, target efi-510199), apo open structure (see paper)
28% identity, 59% coverage: 57:268/361 of query aligns to 22:233/315 of 4pe3A
Sites not aligning to the query:
7e9yA Crystal structure of elacco1 (see paper)
27% identity, 50% coverage: 33:214/361 of query aligns to 1:182/563 of 7e9yA
Sites not aligning to the query:
4ovrA Crystal structure of a trap periplasmic solute binding protein from xanthobacter autotrophicus py2, target efi-510329, with bound beta-d- galacturonate (see paper)
24% identity, 78% coverage: 54:333/361 of query aligns to 19:295/298 of 4ovrA
Sites not aligning to the query:
4xfeA Crystal structure of a trap periplasmic solute binding protein from pseudomonas putida f1 (pput_1203), target efi-500184, with bound d- glucuronate
23% identity, 62% coverage: 55:278/361 of query aligns to 20:242/306 of 4xfeA
Sites not aligning to the query:
4napD Crystal structure of a trap periplasmic solute binding protein from desulfovibrio alaskensis g20 (dde_0634), target efi-510102, with bound d-tryptophan (see paper)
21% identity, 75% coverage: 58:326/361 of query aligns to 24:286/310 of 4napD
Sites not aligning to the query:
4pgpA Crystal structure of a trap periplasmic solute binding protein from desulfovibrio alaskensis g20 (dde_0634, target efi-510120) with bound 3-indole acetic acid (see paper)
21% identity, 75% coverage: 58:326/361 of query aligns to 24:286/308 of 4pgpA
Sites not aligning to the query:
4pgnA Crystal structure of a trap periplasmic solute binding protein from desulfovibrio alaskensis g20 (dde_0634, target efi-510120) with bound indole pyruvate (see paper)
21% identity, 75% coverage: 58:326/361 of query aligns to 24:286/308 of 4pgnA
Sites not aligning to the query:
4xf5A Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_0678), target efi-501078, with bound (s)-(+)-2-amino-1-propanol.
22% identity, 78% coverage: 61:340/361 of query aligns to 27:303/317 of 4xf5A
Sites not aligning to the query:
4uabA Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_0678), target efi-501078, with bound ethanolamine (see paper)
22% identity, 76% coverage: 61:334/361 of query aligns to 26:296/315 of 4uabA
Sites not aligning to the query:
4x8rA Crystal structure of a trap periplasmic solute binding protein from rhodobacter sphaeroides (rsph17029_2138, target efi-510205) with bound glucuronate
22% identity, 79% coverage: 54:337/361 of query aligns to 22:304/304 of 4x8rA
Sites not aligning to the query:
2pfzA Crystal structure of dctp6, a bordetella pertussis extracytoplasmic solute receptor binding pyroglutamic acid (see paper)
24% identity, 80% coverage: 36:322/361 of query aligns to 2:282/301 of 2pfzA
>GFF1041 FitnessBrowser__psRCH2:GFF1041
MSTKNKLSRIACAIGATTLLGASLLSGVASAAEKIRWQVPLAFPSHLIGLSTPVKHLSES
LKAVSGGDIQLRYYEPGELVPPFEIMDAVSSGKYPAGYTWIGYDQGTIPALPLYSGAPFN
MEPPAHLAWYYQGDGKKLLEEIYAQRNIHPMLCSIIGPEGAGWFAKPIEKLEDFDGLRIR
FAGIGGKVLEKLGASVTMVPGGEIYQALERKTIDATEFSQPAVDKMLGLDQIIKNYIMPG
WHQTLTTSHLLVNKDVWDKLKPESRALIEMGCESATLKGFAESEWAQPTALRDYQKQGVK
AQVLPEPVLRELQKVTDKVLDEMAAKDEMFKRVLTSQREFMKHHSIWHGMGYLPRDFYKY
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Lawrence Berkeley National Laboratory