Comparing GFF1057 FitnessBrowser__Phaeo:GFF1057 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3ph4A Clostridium thermocellum ribose-5-phosphate isomerase b with d-allose (see paper)
53% identity, 92% coverage: 8:146/151 of query aligns to 2:140/148 of 3ph4A
3ph3A Clostridium thermocellum ribose-5-phosphate isomerase b with d-ribose (see paper)
53% identity, 92% coverage: 8:146/151 of query aligns to 2:140/148 of 3ph3A
3heeA Structural study of clostridium thermocellum ribose-5-phosphate isomerase b and ribose-5-phosphate (see paper)
53% identity, 92% coverage: 8:146/151 of query aligns to 2:140/148 of 3heeA
P37351 Ribose-5-phosphate isomerase B; Phosphoriboisomerase B; EC 5.3.1.6 from Escherichia coli (strain K12) (see paper)
47% identity, 92% coverage: 8:146/151 of query aligns to 3:141/149 of P37351
6mu0A Crystal structure of ribose-5-phosphate isomerase b from mycoplasma genitalium with bound ribulose-5-phosphate
44% identity, 91% coverage: 9:146/151 of query aligns to 6:145/152 of 6mu0A
3k8cA Complex of trypanosoma cruzi ribose 5-phosphate isomerase type b with 4-deoxy-4-phospho-d-erythronohydroxamic acid (see paper)
37% identity, 92% coverage: 8:146/151 of query aligns to 4:145/152 of 3k8cA
3k7sA Complex of trypanosoma cruzi ribose 5-phosphate isomerase type b with ribose 5-phosphate (see paper)
37% identity, 92% coverage: 8:146/151 of query aligns to 4:145/152 of 3k7sA
4lfnB Crystal structure of d-galactose-6-phosphate isomerase in complex with d-ribulose (see paper)
42% identity, 84% coverage: 9:135/151 of query aligns to 3:129/172 of 4lfnB
4lfmB Crystal structure of d-galactose-6-phosphate isomerase in complex with d-psicose (see paper)
42% identity, 84% coverage: 9:135/151 of query aligns to 3:129/172 of 4lfmB
4lflB Crystal structure of d-galactose-6-phosphate isomerase in complex with d-tagatose-6-phosphate (see paper)
42% identity, 84% coverage: 9:135/151 of query aligns to 3:129/172 of 4lflB
3k7pA Structure of mutant of ribose 5-phosphate isomerase type b from trypanosoma cruzi. (see paper)
37% identity, 92% coverage: 8:146/151 of query aligns to 4:145/153 of 3k7pA
2vvpA Crystal structure of mycobacterium tuberculosis ribose-5-phosphate isomerase b in complex with its substrates ribose 5-phosphate and ribulose 5-phosphate (see paper)
39% identity, 92% coverage: 8:146/151 of query aligns to 3:143/157 of 2vvpA
2betA Structure of mycobacterium tuberculosis ribose-5-phosphate isomerase, rpib, rv2465c, in complex with 4-phospho-d-erythronate. (see paper)
39% identity, 92% coverage: 8:146/151 of query aligns to 3:143/157 of 2betA
2vvqA Crystal structure of mycobacterium tuberculosis ribose-5-phosphate isomerase b in complex with the inhibitor 5-deoxy-5-phospho-d- ribonate (see paper)
39% identity, 92% coverage: 8:146/151 of query aligns to 3:143/156 of 2vvqA
2vvoA Crystal structure of mycobacterium tuberculosis ribose-5-phosphate isomerase b in complex with alpha d-allose 6-phosphate (see paper)
39% identity, 92% coverage: 8:146/151 of query aligns to 3:143/156 of 2vvoA
2besC Structure of mycobacterium tuberculosis ribose-5-phosphate isomerase, rpib, rv2465c, in complex with 4-phospho-d-erythronohydroxamic acid. (see paper)
39% identity, 92% coverage: 8:146/151 of query aligns to 3:143/158 of 2besC
1uslA Structure of mycobacterium tuberculosis ribose-5-phosphate isomerase, rpib, rv2465c, complexed with phosphate. (see paper)
39% identity, 92% coverage: 8:146/151 of query aligns to 3:143/156 of 1uslA
P9WKD7 Ribose-5-phosphate isomerase B; Phosphoriboisomerase B; EC 5.3.1.6 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 3 papers)
39% identity, 92% coverage: 8:146/151 of query aligns to 5:145/162 of P9WKD7
P0CL19 Putative ribose 5-phosphate isomerase; EC 5.3.1.- from Coccidioides immitis (strain RS) (Valley fever fungus) (see paper)
34% identity, 86% coverage: 6:135/151 of query aligns to 8:140/163 of P0CL19
3sgwA Crystal structure of ribose-5-phosphate isomerase b rpib from coccidioides immitis semi-covalently bound to malonic acid (see paper)
34% identity, 86% coverage: 6:135/151 of query aligns to 3:135/158 of 3sgwA
Sites not aligning to the query:
>GFF1057 FitnessBrowser__Phaeo:GFF1057
MDQKKPTRVVLSSDHAAIELRQAIADHITANGWEVVDIGPTTPESTHYPKHGAAAAERVA
SGDCDLGIILCGTGQGIMMAANKVKGIRCGVCSDTFSAKMIRQHNNANMLSIGARVVGDS
LAIEIVDAFLNAEFEGGRHATRVDMIEPQDS
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory