SitesBLAST
Comparing GFF1101 FitnessBrowser__psRCH2:GFF1101 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
4ykgA Crystal structure of the alkylhydroperoxide reductase subunit f (ahpf) with NAD+ from escherichia coli (see paper)
67% identity, 99% coverage: 1:516/520 of query aligns to 1:518/521 of 4ykgA
- active site: C345 (= C343), C348 (= C346), D349 (= D347)
- binding flavin-adenine dinucleotide: G221 (= G220), P222 (= P221), A223 (= A222), G242 (≠ A241), E243 (= E242), G247 (= G246), Q248 (= Q247), T252 (= T251), N257 (= N256), S289 (≠ R288), A290 (= A289), T322 (= T320), G323 (= G321), C348 (= C346), G487 (= G485), D488 (= D486), Q496 (= Q494), I497 (= I495)
- binding nicotinamide-adenine-dinucleotide: I361 (= I359), G364 (= G362), S366 (= S364), E385 (= E383), F386 (= F384), I449 (= I447), M467 (≠ F465), P493 (= P491)
4ykfA Crystal structure of the alkylhydroperoxide reductase subunit f (ahpf) with nadh from escherichia coli (see paper)
67% identity, 99% coverage: 1:516/520 of query aligns to 1:518/521 of 4ykfA
- active site: C345 (= C343), C348 (= C346), D349 (= D347)
- binding flavin-adenine dinucleotide: G221 (= G220), P222 (= P221), A223 (= A222), G242 (≠ A241), E243 (= E242), G247 (= G246), Q248 (= Q247), N257 (= N256), A290 (= A289), T322 (= T320), G323 (= G321), C348 (= C346), N454 (= N452), D488 (= D486), Q496 (= Q494), I497 (= I495)
- binding 1,4-dihydronicotinamide adenine dinucleotide: I361 (= I359), G364 (= G362), N365 (= N363), S366 (= S364), E385 (= E383), F386 (= F384), K391 (≠ R389), I449 (= I447), M467 (≠ F465)
P35340 Alkyl hydroperoxide reductase subunit F; Alkyl hydroperoxide reductase F52A protein; EC 1.8.1.- from Escherichia coli (strain K12) (see paper)
67% identity, 99% coverage: 1:516/520 of query aligns to 1:518/521 of P35340
- K53 (= K53) modified: N6-acetyllysine
- K354 (= K352) modified: N6-acetyllysine
1hyuA Crystal structure of intact ahpf (see paper)
66% identity, 99% coverage: 1:516/520 of query aligns to 1:518/521 of 1hyuA
- binding flavin-adenine dinucleotide: G221 (= G220), P222 (= P221), A223 (= A222), E243 (= E242), G247 (= G246), Q248 (= Q247), N257 (= N256), S289 (≠ R288), A290 (= A289), T322 (= T320), G323 (= G321), W326 (= W324), C345 (= C343), D488 (= D486), K495 (= K493), Q496 (= Q494), I497 (= I495)
7jypA Structure of thioredoxin reductase from the thermophilic eubacterium thermosipho africanus tcf52b
39% identity, 57% coverage: 209:505/520 of query aligns to 3:296/305 of 7jypA
- binding flavin-adenine dinucleotide: G12 (= G218), G14 (= G220), P15 (= P221), A16 (= A222), F34 (≠ A240), E35 (≠ A241), K36 (≠ E242), G41 (= G246), A42 (≠ Q247), V83 (≠ Q291), T112 (= T320), G113 (= G321), G276 (= G485), D277 (= D486)
- binding nicotinamide-adenine-dinucleotide: G153 (= G361), G154 (= G362), S156 (= S364), Q175 (≠ E383), N176 (≠ F384), T181 (≠ R389), V238 (≠ I447)
3ctyB Crystal structure of t. Acidophilum thioredoxin reductase (see paper)
38% identity, 58% coverage: 212:514/520 of query aligns to 5:304/305 of 3ctyB
- active site: A38 (vs. gap), T42 (≠ V248), L47 (≠ A253), N50 (= N256), C133 (= C343), C136 (= C346), D137 (= D347)
- binding flavin-adenine dinucleotide: V10 (= V217), G11 (= G218), A15 (= A222), D34 (≠ A241), K35 (≠ E242), G40 (= G246), L41 (≠ Q247), T42 (≠ V248), A45 (≠ T251), P46 (≠ M252), N50 (= N256), V82 (= V281), T110 (= T320), G111 (= G321), S154 (= S364), Q241 (≠ N452), G275 (= G485), D276 (= D486), A283 (≠ K493), Q284 (= Q494), I285 (= I495)
5mh4A Crystal structure of lactococcus lactis thioredoxin reductase (fr conformation) (see paper)
35% identity, 58% coverage: 212:514/520 of query aligns to 2:301/303 of 5mh4A
- active site: V34 (vs. gap), P35 (vs. gap), M39 (≠ V248), E44 (≠ A253), C130 (= C343), C133 (= C346), D134 (= D347)
- binding flavin-adenine dinucleotide: G10 (= G220), P11 (= P221), A12 (= A222), E31 (= E242), R32 (= R243), G37 (= G246), Q38 (= Q247), T42 (= T251), N47 (= N256), G77 (≠ Q291), V79 (≠ I293), T107 (= T320), G108 (= G321), E155 (≠ A368), V239 (≠ N452), F242 (≠ W455), G272 (= G485), D273 (= D486), Q281 (= Q494), I282 (= I495)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: I146 (= I359), G147 (= G360), G148 (= G361), G149 (= G362), D150 (≠ N363), S151 (= S364), E154 (= E367), H170 (≠ E383), R171 (≠ F384), R172 (≠ G385), R176 (= R389), V234 (≠ I447), G235 (= G448), R280 (≠ K493), Q281 (= Q494)
3f8pD Structure of sulfolobus solfataricus trxr-b3 (see paper)
34% identity, 59% coverage: 206:513/520 of query aligns to 1:307/310 of 3f8pD
- active site: C135 (= C343), C138 (= C346), D139 (= D347)
- binding nicotinamide-adenine-dinucleotide: V12 (= V217), G13 (= G218), L14 (≠ G219), G15 (= G220), P16 (= P221), A17 (= A222), G36 (≠ A241), T38 (≠ R243), G41 (= G246), Q42 (= Q247), I82 (≠ R288), V83 (≠ A289), G111 (≠ A319), I112 (≠ T320), G113 (= G321), G277 (= G485), D278 (= D486)
3f8rA Crystal structure of sulfolobus solfataricus thioredoxin reductase b3 in complex with two NADP molecules (see paper)
33% identity, 59% coverage: 206:513/520 of query aligns to 1:305/308 of 3f8rA
- active site: C133 (= C343), C136 (= C346), D137 (= D347)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: V12 (= V217), G13 (= G218), L14 (≠ G219), G15 (= G220), P16 (= P221), A17 (= A222), E37 (= E242), T38 (≠ R243), G41 (= G246), Q42 (= Q247), I82 (≠ L292), V83 (≠ I293), G109 (≠ A319), I110 (≠ T320), G111 (= G321), R115 (= R325), L117 (≠ M327), D153 (≠ N363), S154 (= S364), E157 (= E367), R174 (≠ F384), R175 (≠ G385), Y184 (≠ L394), I236 (= I447), G275 (= G485), D276 (= D486), L282 (≠ V490), G283 (≠ P491), R285 (≠ K493)
5uwyA The crystal structure of thioredoxin reductase from streptococcus pyogenes mgas5005
35% identity, 58% coverage: 212:513/520 of query aligns to 5:303/306 of 5uwyA
- binding flavin-adenine dinucleotide: G13 (= G220), P14 (= P221), A15 (= A222), E34 (≠ A241), Q35 (≠ E242), G40 (= G246), Q41 (= Q247), T45 (= T251), N50 (= N256), V82 (≠ S290), T110 (= T320), G111 (= G321), Y114 (≠ W324), C136 (= C346), V242 (≠ N452), G275 (= G485), D276 (= D486), Q284 (= Q494), I285 (= I495)
4gcmB Crystal structure of a thioredoxine reductase (trxb) from staphylococcus aureus subsp. Aureus mu50 at 1.80 a resolution
37% identity, 58% coverage: 212:513/520 of query aligns to 5:303/309 of 4gcmB
- active site: C133 (= C343), C136 (= C346), D137 (= D347)
- binding flavin-adenine dinucleotide: G11 (= G218), G13 (= G220), P14 (= P221), A15 (= A222), E34 (= E242), R35 (= R243), G40 (= G246), Q41 (= Q247), T45 (= T251), N50 (= N256), D81 (≠ Q291), I82 (≠ L292), T110 (= T320), G111 (= G321), C136 (= C346), G275 (= G485), D276 (= D486), Q284 (= Q494), I285 (= I495)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: I117 (≠ M327), G151 (= G361), G152 (= G362), D153 (≠ N363), S154 (= S364), E157 (= E367), R174 (≠ F384), R175 (≠ G385), R179 (= R389), Q181 (≠ D391), I237 (= I447)
3f8dA Structure of sulfolobus solfataricus thioredoxin reductase mutant c147a (see paper)
33% identity, 59% coverage: 206:513/520 of query aligns to 1:305/308 of 3f8dA
- active site: C133 (= C343), A136 (≠ C346), D137 (= D347)
- binding flavin-adenine dinucleotide: V12 (= V217), G13 (= G218), L14 (≠ G219), G15 (= G220), P16 (= P221), A17 (= A222), G36 (≠ A241), E37 (= E242), T38 (≠ R243), G41 (= G246), Q42 (= Q247), E45 (≠ D250), A46 (≠ T251), V49 (≠ I254), D51 (≠ N256), I82 (≠ L292), V83 (≠ I293), G109 (≠ A319), I110 (≠ T320), G111 (= G321), C133 (= C343), A136 (≠ C346), G275 (= G485), D276 (= D486), R285 (≠ K493), Q286 (= Q494), V287 (≠ I495)
P0A9P4 Thioredoxin reductase; TRXR; EC 1.8.1.9 from Escherichia coli (strain K12) (see 2 papers)
35% identity, 58% coverage: 214:513/520 of query aligns to 9:314/321 of P0A9P4
- 36:43 (vs. 240:247, 38% identical) binding
- C136 (= C343) modified: Disulfide link with 139, Redox-active
- C139 (= C346) modified: Disulfide link with 136, Redox-active
- 287:296 (vs. 486:495, 40% identical) binding
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
7aawB Thioredoxin reductase from bacillus cereus (see paper)
36% identity, 57% coverage: 212:509/520 of query aligns to 4:298/311 of 7aawB
- binding flavin-adenine dinucleotide: G10 (= G218), G12 (= G220), P13 (= P221), A14 (= A222), E33 (= E242), R34 (= R243), G39 (= G246), Q40 (= Q247), T44 (= T251), N49 (= N256), G79 (vs. gap), D80 (= D280), V81 (= V281), S109 (≠ T320), G110 (= G321), Y113 (≠ W324), C135 (= C346), G274 (= G485), D275 (= D486), Q283 (= Q494), I284 (= I495)
- binding alpha-D-glucopyranose: D46 (≠ A253), E48 (= E255), G126 (= G337), G128 (= G339), D136 (= D347), A138 (≠ P349), F139 (≠ L350), F139 (≠ L350), F140 (= F351)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G150 (= G361), G151 (= G362), D152 (≠ N363), S153 (= S364), E156 (= E367), H172 (≠ E383), R173 (≠ F384), R174 (≠ G385), R178 (= R389), I236 (= I447)
7aawA Thioredoxin reductase from bacillus cereus (see paper)
36% identity, 57% coverage: 212:509/520 of query aligns to 7:301/315 of 7aawA
- binding flavin-adenine dinucleotide: G13 (= G218), G15 (= G220), P16 (= P221), A17 (= A222), E36 (= E242), R37 (= R243), G42 (= G246), Q43 (= Q247), T47 (= T251), N52 (= N256), G82 (vs. gap), V84 (= V281), A111 (= A319), S112 (≠ T320), G113 (= G321), C138 (= C346), G277 (= G485), D278 (= D486), Q286 (= Q494), I287 (= I495)
- binding alpha-D-glucopyranose: R27 (= R232), D49 (≠ A253), K74 (≠ E278), F75 (≠ Y279), P122 (= P330), G123 (= G331), E126 (= E334), G129 (= G337), G131 (= G339), V132 (= V340), F143 (= F351), E206 (= E414), N208 (≠ K416)
2q7vA Crystal structure of deinococcus radiodurans thioredoxin reductase (see paper)
34% identity, 57% coverage: 212:507/520 of query aligns to 8:304/313 of 2q7vA
- active site: P41 (vs. gap), I45 (≠ V248), E50 (≠ A253), C141 (= C343), C144 (= C346), D145 (= D347)
- binding flavin-adenine dinucleotide: G16 (= G220), P17 (= P221), A18 (= A222), E37 (≠ A241), K38 (≠ E242), G43 (= G246), Q44 (= Q247), I45 (≠ V248), N53 (= N256), E85 (≠ N285), V86 (≠ L286), T118 (= T320), G119 (= G321), C144 (= C346), G282 (= G485), D283 (= D486), Q291 (= Q494), L292 (≠ I495), S295 (≠ A498)
5uthA Crystal structure of thioredoxin reductase from mycobacterium smegmatis in complex with fad
35% identity, 57% coverage: 212:509/520 of query aligns to 4:299/306 of 5uthA
- active site: C133 (= C343), C136 (= C346), D137 (= D347)
- binding flavin-adenine dinucleotide: I9 (≠ V217), G10 (= G218), S11 (≠ G219), G12 (= G220), P13 (= P221), A14 (= A222), F32 (vs. gap), E33 (≠ A240), G34 (≠ A241), Q36 (≠ R243), G39 (= G246), A40 (≠ Q247), L41 (≠ V248), N49 (= N256), D81 (= D280), V82 (= V281), M110 (≠ T320), G111 (= G321), C136 (= C346), G275 (= G485), D276 (= D486), R283 (≠ K493), Q284 (= Q494), A285 (≠ I495), A288 (= A498)
8ccmA Crystal structure of mycobacterium smegmatis thioredoxin reductase in complex with compound 2-06
35% identity, 57% coverage: 212:509/520 of query aligns to 3:298/305 of 8ccmA
- binding flavin-adenine dinucleotide: I8 (≠ V217), G9 (= G218), S10 (≠ G219), G11 (= G220), P12 (= P221), A13 (= A222), E32 (≠ A240), G33 (≠ A241), Q35 (≠ R243), G38 (= G246), A39 (≠ Q247), L40 (≠ V248), T43 (= T251), N48 (= N256), D80 (= D280), V81 (= V281), M109 (≠ T320), G110 (= G321), T131 (≠ Y342), C135 (= C346), G274 (= G485), D275 (= D486), R282 (≠ K493), Q283 (= Q494), A284 (≠ I495), A287 (= A498)
- binding ~{N}6-(4-aminophenyl)-1,2-benzothiazole-3,6-diamine: R114 (= R325), H115 (≠ E326), L116 (≠ M327), R173 (≠ F384), E200 (≠ Q411), I201 (≠ T412), I235 (= I447)
8cclA Crystal structure of mycobacterium smegmatis thioredoxin reductase in complex with fragment f2x-entry a09
35% identity, 57% coverage: 212:509/520 of query aligns to 3:298/305 of 8cclA
- binding flavin-adenine dinucleotide: I8 (≠ V217), G9 (= G218), S10 (≠ G219), G11 (= G220), P12 (= P221), A13 (= A222), E32 (≠ A240), G33 (≠ A241), Q35 (≠ R243), G38 (= G246), A39 (≠ Q247), L40 (≠ V248), T43 (= T251), N48 (= N256), D80 (= D280), V81 (= V281), M109 (≠ T320), G110 (= G321), T131 (≠ Y342), C135 (= C346), G274 (= G485), D275 (= D486), R282 (≠ K493), Q283 (= Q494), A284 (≠ I495), A287 (= A498)
- binding [1,2]thiazolo[5,4-b]pyridin-3-amine: L116 (≠ M327), R173 (≠ F384), E200 (≠ Q411), I201 (≠ T412)
8cckA Crystal structure of mycobacterium smegmatis thioredoxin reductase in complex with fragment f2x-entry h07
35% identity, 57% coverage: 212:509/520 of query aligns to 3:298/305 of 8cckA
- binding flavin-adenine dinucleotide: G9 (= G218), S10 (≠ G219), G11 (= G220), P12 (= P221), A13 (= A222), E32 (≠ A240), G33 (≠ A241), Q35 (≠ R243), G38 (= G246), A39 (≠ Q247), L40 (≠ V248), T43 (= T251), N48 (= N256), D80 (= D280), V81 (= V281), M109 (≠ T320), G110 (= G321), T131 (≠ Y342), C135 (= C346), G274 (= G485), D275 (= D486), R282 (≠ K493), Q283 (= Q494), A284 (≠ I495), A287 (= A498)
- binding ~{N}-(4-hydroxyphenyl)-2-pyrazol-1-yl-ethanamide: R114 (= R325), H115 (≠ E326), L116 (≠ M327), V148 (≠ I359), R173 (≠ F384), E200 (≠ Q411), I201 (≠ T412)
Query Sequence
>GFF1101 FitnessBrowser__psRCH2:GFF1101
MLDTNLKTQLKAYLEKVTQPFEIVASLDDGEKSREMLSLLQDIAGLSDKITLKTDGDDAR
KPSFSLNRIGGNISLRFAGIPMGHEFTSLVLALLQVGGHPSKTAPEVIEQIKTLEGDYRF
ETYFSLSCQNCPDVVQALNLMAVLNPNIQHVAIDGALFQDEVEARQIMSVPSIYLNGELF
TQGRMSEEEILAKLDTGSSARDAEKLKAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGVA
AERFGGQVLDTMAIENFISVKETEGPKLARALEEHVREYDVDIINLQRASQLIPAGDDGL
HRVQFENGGELKAKTLILATGARWREMNVPGEQEYRGRGVAYCPHCDGPLFKGKRVAVIG
GGNSGVEAAIDLAGIVAHVTLLEFGEELRADAVLQRKLFSLPNVRVLKMAQTTEVKGDGQ
KVTGLVYKDRSSEEVHNVELEGIFVQIGLLPNSEWLKGTLELSRFGEIIVDAKGQTSIPG
VFAAGDVTTVPYKQIVIAVGEGAKASLSAFDHLIRSSAPA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory