SitesBLAST
Comparing GFF1170 FitnessBrowser__WCS417:GFF1170 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4f3xA Crystal structure of putative aldehyde dehydrogenase from sinorhizobium meliloti 1021 complexed with NAD
64% identity, 98% coverage: 10:482/485 of query aligns to 4:476/476 of 4f3xA
- active site: N150 (= N156), K173 (= K179), E247 (= E253), C281 (= C287), E379 (= E385), D456 (= D462)
- binding nicotinamide-adenine-dinucleotide: I146 (= I152), A147 (= A153), P148 (= P154), W149 (= W155), K173 (= K179), E176 (= E182), G205 (= G211), G209 (= G215), I213 (≠ V219), I223 (≠ L229), G225 (= G231), D226 (= D232), T229 (= T235), G249 (= G255), C281 (= C287), Q328 (= Q334), R331 (= R337), E379 (= E385), F381 (= F387)
P77674 Gamma-aminobutyraldehyde dehydrogenase; ABALDH; 1-pyrroline dehydrogenase; 4-aminobutanal dehydrogenase; 5-aminopentanal dehydrogenase; EC 1.2.1.19; EC 1.2.1.- from Escherichia coli (strain K12) (see paper)
64% identity, 97% coverage: 12:481/485 of query aligns to 5:474/474 of P77674
1wndA Escherichia coli ydcw gene product is a medium-chain aldehyde dehydrogenase as determined by kinetics and crystal structure (see paper)
64% identity, 97% coverage: 12:481/485 of query aligns to 5:474/474 of 1wndA
- active site: N149 (= N156), K172 (= K179), E246 (= E253), C280 (= C287), E378 (= E385), D455 (= D462)
- binding calcium ion: G249 (= G256), K250 (= K257), A251 (= A258), G405 (= G412), L406 (= L413), A407 (= A414), Y427 (= Y434)
1wnbB Escherichia coli ydcw gene product is a medium-chain aldehyde dehydrogenase (complexed with nadh and betaine aldehyde) (see paper)
64% identity, 97% coverage: 12:481/485 of query aligns to 5:474/474 of 1wnbB
- active site: N149 (= N156), K172 (= K179), E246 (= E253), C280 (= C287), E378 (= E385), D455 (= D462)
- binding betaine aldehyde: D279 (= D286), F436 (= F443), L438 (= L445)
- binding 1,4-dihydronicotinamide adenine dinucleotide: I145 (= I152), A146 (= A153), W148 (= W155), K172 (= K179), G204 (= G211), G208 (= G215), D209 (≠ S216), T223 (= T230), G224 (= G231), S225 (≠ D232), T228 (= T235), H231 (≠ K238), G248 (= G255), E378 (= E385)
1wnbA Escherichia coli ydcw gene product is a medium-chain aldehyde dehydrogenase (complexed with nadh and betaine aldehyde) (see paper)
64% identity, 97% coverage: 12:481/485 of query aligns to 5:474/474 of 1wnbA
- active site: N149 (= N156), K172 (= K179), E246 (= E253), C280 (= C287), E378 (= E385), D455 (= D462)
- binding 1,4-dihydronicotinamide adenine dinucleotide: I145 (= I152), A146 (= A153), W148 (= W155), K172 (= K179), G204 (= G211), G208 (= G215), D209 (≠ S216), G224 (= G231), S225 (≠ D232), T228 (= T235), H231 (≠ K238), G248 (= G255), F380 (= F387)
4neaA 1.90 angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betb) from staphylococcus aureus in complex with NAD+ and bme-free cys289 (see paper)
39% identity, 97% coverage: 14:485/485 of query aligns to 22:499/505 of 4neaA
- active site: N166 (= N156), K189 (= K179), E264 (= E253), C298 (= C287), E399 (= E385), E476 (≠ D462)
- binding nicotinamide-adenine-dinucleotide: P164 (= P154), K189 (= K179), E192 (= E182), G222 (= G211), G226 (= G215), G242 (= G231), G243 (≠ D232), T246 (= T235), H249 (≠ K238), I250 (= I239), C298 (= C287), E399 (= E385), F401 (= F387)
4o6rA Crystal structure of a putative aldehyde dehydrogenase from burkholderia cenocepacia
41% identity, 97% coverage: 8:477/485 of query aligns to 2:475/489 of 4o6rA
- active site: N150 (= N156), K173 (= K179), E248 (= E253), C282 (= C287), E383 (= E385), E460 (≠ D462)
- binding adenosine monophosphate: I146 (= I152), V147 (≠ A153), K173 (= K179), G206 (= G211), G210 (= G215), Q211 (≠ S216), F224 (≠ L229), G226 (= G231), S227 (≠ D232), T230 (= T235), R233 (≠ K238)
5gtlA NADPH complex structure of aldehyde dehydrogenase from bacillus cereus
37% identity, 96% coverage: 12:477/485 of query aligns to 19:486/491 of 5gtlA
- active site: N165 (= N156), K188 (= K179), E263 (= E253), C297 (= C287), E394 (= E385), E471 (≠ D462)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I161 (= I152), P163 (= P154), K188 (= K179), A190 (≠ S181), E191 (= E182), Q192 (≠ H183), G221 (= G211), G225 (= G215), G241 (= G231), S242 (≠ D232), T245 (= T235), L264 (= L254), C297 (= C287), E394 (= E385), F396 (= F387)
5gtkA NAD+ complex structure of aldehyde dehydrogenase from bacillus cereus
37% identity, 96% coverage: 12:477/485 of query aligns to 19:486/491 of 5gtkA
- active site: N165 (= N156), K188 (= K179), E263 (= E253), C297 (= C287), E394 (= E385), E471 (≠ D462)
- binding nicotinamide-adenine-dinucleotide: I161 (= I152), I162 (≠ A153), P163 (= P154), W164 (= W155), K188 (= K179), E191 (= E182), G221 (= G211), G225 (= G215), A226 (≠ S216), F239 (≠ L229), G241 (= G231), S242 (≠ D232), T245 (= T235), Y248 (≠ K238), L264 (= L254), C297 (= C287), Q344 (= Q334), R347 (= R337), E394 (= E385), F396 (= F387)
4go4A Crystal structure of pnpe in complex with nicotinamide adenine dinucleotide
40% identity, 96% coverage: 12:477/485 of query aligns to 5:473/487 of 4go4A
- active site: N149 (= N156), K172 (= K179), E247 (= E253), C281 (= C287), E381 (= E385), E458 (≠ D462)
- binding nicotinamide-adenine-dinucleotide: I145 (= I152), V146 (≠ A153), W148 (= W155), N149 (= N156), F154 (≠ M161), K172 (= K179), G205 (= G211), G209 (= G215), Q210 (≠ S216), F223 (≠ L229), T224 (= T230), G225 (= G231), S226 (≠ D232), T229 (= T235), E247 (= E253), G249 (= G255), C281 (= C287), E381 (= E385), F383 (= F387)
4cazA Crystal structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa in complex with nadh
38% identity, 98% coverage: 12:484/485 of query aligns to 8:485/489 of 4cazA
- active site: N152 (= N156), K175 (= K179), E251 (= E253), C285 (= C287), E386 (= E385), E463 (≠ D462)
- binding [[(2R,3S,4R,5R)-5-[(3R)-3-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate: I148 (= I152), G149 (≠ A153), W151 (= W155), N152 (= N156), K175 (= K179), E178 (= E182), G208 (= G211), G212 (= G215), F226 (≠ L229), T227 (= T230), G228 (= G231), G229 (≠ D232), T232 (= T235), V236 (≠ I239), E251 (= E253), L252 (= L254), C285 (= C287), E386 (= E385), F388 (= F387)
2woxA Betaine aldehyde dehydrogenase from pseudomonas aeruginosa with NAD(p) h-catalytic thiol adduct. (see paper)
38% identity, 98% coverage: 12:484/485 of query aligns to 8:485/489 of 2woxA
- active site: N152 (= N156), K175 (= K179), E251 (= E253), C285 (= C287), E386 (= E385), E463 (≠ D462)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I148 (= I152), G149 (≠ A153), W151 (= W155), N152 (= N156), K175 (= K179), S177 (= S181), E178 (= E182), G208 (= G211), G212 (= G215), F226 (≠ L229), T227 (= T230), G228 (= G231), G229 (≠ D232), T232 (= T235), V236 (≠ I239), E251 (= E253), L252 (= L254), C285 (= C287), E386 (= E385), F388 (= F387)
2wmeA Crystallographic structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa (see paper)
38% identity, 98% coverage: 12:484/485 of query aligns to 8:485/489 of 2wmeA
- active site: N152 (= N156), K175 (= K179), E251 (= E253), C285 (= C287), E386 (= E385), E463 (≠ D462)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G149 (≠ A153), W151 (= W155), K175 (= K179), S177 (= S181), E178 (= E182), G208 (= G211), G212 (= G215), F226 (≠ L229), G228 (= G231), G229 (≠ D232), T232 (= T235), V236 (≠ I239)
Q9HTJ1 NAD/NADP-dependent betaine aldehyde dehydrogenase; BADH; EC 1.2.1.8 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
38% identity, 98% coverage: 12:484/485 of query aligns to 9:486/490 of Q9HTJ1
- GAWN 150:153 (≠ APWN 153:156) binding
- K162 (= K165) active site, Charge relay system
- KPSE 176:179 (= KPSE 179:182) binding
- G209 (= G211) binding
- GTST 230:233 (≠ DIVT 232:235) binding
- E252 (= E253) active site, Proton acceptor
- C286 (= C287) binding covalent; modified: Cysteine sulfenic acid (-SOH)
- E387 (= E385) binding
- E464 (≠ D462) active site, Charge relay system
P47895 Retinaldehyde dehydrogenase 3; RALDH-3; RalDH3; Aldehyde dehydrogenase 6; Aldehyde dehydrogenase family 1 member A3; ALDH1A3; EC 1.2.1.36 from Homo sapiens (Human) (see 2 papers)
35% identity, 99% coverage: 2:482/485 of query aligns to 18:508/512 of P47895
- R89 (≠ S63) to C: in MCOP8; does not affect ALDH1A3 expression; results in strongly reduced protein levels; dbSNP:rs397514652
- K204 (= K179) binding
- E207 (= E182) binding
- GSTEVG 257:262 (≠ GDIVTG 231:236) binding
- Q361 (= Q334) binding
- E411 (= E385) binding
- A493 (≠ S467) to P: in MCOP8; does not affect ALDH1A3 expression; results in strongly reduced protein levels; dbSNP:rs397514653
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 2 modified: N-acetylalanine
6b5hA Aldh1a2 liganded with NAD and 1-(4-cyanophenyl)-n-(3-fluorophenyl)-3- [4-(methylsulfonyl)phenyl]-1h-pyrazole-4-carboxamide (compound cm121) (see paper)
35% identity, 99% coverage: 4:484/485 of query aligns to 2:490/492 of 6b5hA
- active site: N161 (= N156), E260 (= E253), C294 (= C287), E468 (≠ D462)
- binding 1-(4-cyanophenyl)-N-(3-fluorophenyl)-3-[4-(methylsulfonyl)phenyl]-1H-pyrazole-4-carboxamide: V112 (≠ D106), G116 (≠ A110), F162 (≠ Y157), W169 (= W164), Q284 (≠ A277), F288 (≠ Y281), T295 (= T288), N449 (≠ F443), L451 (= L445), N452 (≠ V446), F457 (≠ H451)
- binding nicotinamide-adenine-dinucleotide: I157 (= I152), I158 (≠ A153), W160 (= W155), N161 (= N156), K184 (= K179), G217 (= G211), G221 (= G215), F235 (≠ L229), T236 (= T230), G237 (= G231), S238 (≠ D232), V241 (≠ T235), E260 (= E253), L261 (= L254), C294 (= C287), F393 (= F387)
6b5gA Aldh1a2 liganded with NAD and (3-ethoxythiophen-2-yl){4-[4-nitro-3- (pyrrolidin-1-yl)phenyl]piperazin-1-yl}methanone (compound 6-118) (see paper)
35% identity, 99% coverage: 4:484/485 of query aligns to 2:490/492 of 6b5gA
- active site: N161 (= N156), E260 (= E253), C294 (= C287), E468 (≠ D462)
- binding (3-ethoxythiophen-2-yl){4-[4-nitro-3-(pyrrolidin-1-yl)phenyl]piperazin-1-yl}methanone: F162 (≠ Y157), L165 (≠ M160), W169 (= W164), F288 (≠ Y281), C293 (≠ D286), C294 (= C287), T295 (= T288), N449 (≠ F443), L451 (= L445)
- binding nicotinamide-adenine-dinucleotide: I157 (= I152), I158 (≠ A153), P159 (= P154), W160 (= W155), N161 (= N156), M166 (= M161), K184 (= K179), E187 (= E182), G217 (= G211), G221 (= G215), F235 (≠ L229), T236 (= T230), G237 (= G231), S238 (≠ D232), V241 (≠ T235), E260 (= E253), L261 (= L254), C294 (= C287), E391 (= E385), F393 (= F387)
6aljA Aldh1a2 liganded with NAD and compound win18,446 (see paper)
35% identity, 99% coverage: 4:484/485 of query aligns to 2:490/492 of 6aljA
- active site: N161 (= N156), E260 (= E253), C294 (= C287), E468 (≠ D462)
- binding N,N'-(octane-1,8-diyl)bis(2,2-dichloroacetamide): G116 (≠ A110), F162 (≠ Y157), L165 (≠ M160), M166 (= M161), W169 (= W164), E260 (= E253), C293 (≠ D286), C294 (= C287), L451 (= L445), N452 (≠ V446), A453 (≠ S447)
- binding nicotinamide-adenine-dinucleotide: I157 (= I152), I158 (≠ A153), P159 (= P154), W160 (= W155), N161 (= N156), K184 (= K179), E187 (= E182), G217 (= G211), G221 (= G215), F235 (≠ L229), G237 (= G231), S238 (≠ D232), V241 (≠ T235), Q341 (= Q334), K344 (≠ R337), E391 (= E385), F393 (= F387)
O94788 Retinal dehydrogenase 2; RALDH 2; RalDH2; Aldehyde dehydrogenase family 1 member A2; ALDH1A2; Retinaldehyde-specific dehydrogenase type 2; RALDH(II); EC 1.2.1.36 from Homo sapiens (Human) (see 6 papers)
35% identity, 99% coverage: 4:484/485 of query aligns to 28:516/518 of O94788
- E50 (≠ Q22) to G: in dbSNP:rs34266719
- A110 (= A78) to V: in dbSNP:rs35365164
- Q182 (≠ S151) to K: in DIH4; decreased retinoic acid biosynthetic process
- IPW 184:186 (≠ APW 153:155) binding
- KPAE 210:213 (≠ KPSE 179:182) binding
- STE 264:266 (≠ DIV 232:234) binding
- C320 (= C287) active site, Nucleophile
- R347 (≠ L314) to H: in DIH4; decreased expression; dbSNP:rs141245344
- V348 (≠ R315) to I: in dbSNP:rs4646626
- KQYNK 366:370 (≠ RQRDR 333:337) binding
- A383 (= A357) to T: in DIH4; uncertain significance; dbSNP:rs749124508
- E417 (= E385) binding
- E436 (≠ D404) to K: in dbSNP:rs34744827
- S461 (≠ A429) to Y: in DIH4; decreased retinoic acid biosynthetic process
7qk9A Crystal structure of the aldh1a3-atp complex (see paper)
36% identity, 98% coverage: 9:482/485 of query aligns to 12:489/489 of 7qk9A
- binding adenosine-5'-triphosphate: I158 (= I152), T159 (≠ A153), P160 (= P154), W161 (= W155), K185 (= K179), E188 (= E182), G218 (= G211), G222 (= G215), F236 (≠ L229), S239 (≠ D232), V242 (≠ T235)
Query Sequence
>GFF1170 FitnessBrowser__WCS417:GFF1170
MPGAPTPLLTALLIDGELVHGQGFAEPILNPATGEVLTQIAEASAEQVETAILAAHRAFA
GWSRTTPQQRSNILLGIADAIEKQADYLARLESLNCGKPLHLARQDDLSATVDVFRFFAG
AVRCQTGQLSGEYLPGYTSMVRRDPIGVVASIAPWNYPLMMAAWKIAPALAAGNTLVFKP
SEHTPLSILALAPVLKELLPRGVINILCGGGEGVGSHLVSHPKVRMVSLTGDIVTGQKIL
QAASKTLKRTHLELGGKAPVIVCNDADLHAVVDGVRAYGYYNAGQDCTAACRIYAQAGIH
DKLVAELGAAVSSLRFAGKRDADNELGPLISTRQRDRVASFVERALGQPHIERITGAAVH
SGAGFYYQPTLLAGCKQNDEIVQREVFGPVVTVTRFDELEQAVDWANDSEYGLASSVWTQ
NLDKAMQVAARLQYGCTWINSHFMLVSEMPHGGLKRSGYGKDLSSDSLQDYSVVRHIMAR
HGQHL
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory