Comparing GFF1180 FitnessBrowser__Phaeo:GFF1180 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
P0A6K6 Phosphopentomutase; Phosphodeoxyribomutase; EC 5.4.2.7 from Escherichia coli (strain K12) (see paper)
49% identity, 97% coverage: 1:392/406 of query aligns to 1:395/407 of P0A6K6
3ot9A Phosphopentomutase from bacillus cereus bound to glucose-1,6- bisphosphate (see paper)
42% identity, 97% coverage: 3:396/406 of query aligns to 5:380/391 of 3ot9A
3m8zA Phosphopentomutase from bacillus cereus bound with ribose-5-phosphate (see paper)
42% identity, 97% coverage: 3:396/406 of query aligns to 5:380/391 of 3m8zA
4lr9A Phosphopentomutase s154a variant soaked with 2,3-dideoxyribose 5- phosphate (see paper)
42% identity, 97% coverage: 3:396/406 of query aligns to 5:380/391 of 4lr9A
4lr7A Phosphopentomutase s154a variant (see paper)
42% identity, 97% coverage: 3:396/406 of query aligns to 5:380/391 of 4lr7A
4n7tA Crystal structure of phosphorylated phosphopentomutase from streptococcus mutans
38% identity, 97% coverage: 3:394/406 of query aligns to 5:388/402 of 4n7tA
>GFF1180 FitnessBrowser__Phaeo:GFF1180
MPRAFLVVMDSVGIGGAPDAGAYFNGDLPDLGANTLAHIAQACAAGQAEEGRSGPLHLPN
LDQLGLGAAVALVSAVPCPDLGGAGVTGRWGAAREISRGKDTPSGHWELAGLPVPWDWCY
FPDQTPAFPDHLVAHVCAAAGTEAILGNCHASGTAIIAEHGAAHMQSGLPICYTSADSVF
QIAAHEETFGLNRLLALCEAVAPYLHQMKVGRVIARPFIGTPQTGFQRTTNRRDYAIMPP
APILTNWVQDAGQLVHAIGKIGDIFSMQGIDTLKKGDDATLMQYLHDAVAGAEEGSLTFA
NFVEFDSLYGHRRDISGYAQALEWFDREIGTLLPRLREGDLLILTADHGNDPSWPGTDHT
REQVPVLIAGAGAGPLGTIGFVDVAATVAAHLNVPVQGPGRPALAM
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory