Comparing GFF1247 PGA1_c12630 putative high-affinity branched-chain amino acid transport ATP-binding protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
46% identity, 92% coverage: 21:251/251 of query aligns to 7:239/240 of 1ji0A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
32% identity, 92% coverage: 19:250/251 of query aligns to 1:235/240 of 6mjpA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
32% identity, 91% coverage: 23:250/251 of query aligns to 4:237/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
32% identity, 87% coverage: 21:239/251 of query aligns to 3:224/241 of 4u00A
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
32% identity, 92% coverage: 19:249/251 of query aligns to 1:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
32% identity, 92% coverage: 19:249/251 of query aligns to 1:234/234 of 4p31A
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
32% identity, 92% coverage: 19:249/251 of query aligns to 1:234/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
32% identity, 92% coverage: 19:249/251 of query aligns to 1:234/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
32% identity, 92% coverage: 19:249/251 of query aligns to 1:234/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
31% identity, 92% coverage: 19:249/251 of query aligns to 2:235/241 of 6mbnA
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
31% identity, 92% coverage: 19:248/251 of query aligns to 1:233/233 of 6b8bA
3c4jA Abc protein artp in complex with atp-gamma-s
29% identity, 88% coverage: 21:240/251 of query aligns to 4:227/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
29% identity, 88% coverage: 21:240/251 of query aligns to 4:227/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
29% identity, 88% coverage: 21:240/251 of query aligns to 4:227/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
29% identity, 88% coverage: 21:240/251 of query aligns to 4:227/242 of 2oljA
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
29% identity, 86% coverage: 16:230/251 of query aligns to 6:231/257 of P0AAH0
Sites not aligning to the query:
7zdkC If(apo/asym) conformation of cyddc in amp-pnp(cydc)/amp-pnp(cydd) bound state (dataset-8) (see paper)
33% identity, 88% coverage: 21:242/251 of query aligns to 339:563/573 of 7zdkC
7zdfC If(heme/confined) conformation of cyddc in amp-pnp(cydd) bound state (dataset-4) (see paper)
33% identity, 88% coverage: 21:242/251 of query aligns to 339:563/573 of 7zdfC
Sites not aligning to the query:
7zdaC If(apo/asym) conformation of cyddc in adp+pi(cydc)/atp(cydd) bound state (dataset-2) (see paper)
33% identity, 88% coverage: 21:242/251 of query aligns to 339:563/572 of 7zdaC
Sites not aligning to the query:
7zdtC Occ(apo/return) conformation of cyddc mutant (e500q.C) in atp(cydc) bound state (dataset-18) (see paper)
32% identity, 88% coverage: 21:242/251 of query aligns to 339:563/572 of 7zdtC
>GFF1247 PGA1_c12630 putative high-affinity branched-chain amino acid transport ATP-binding protein
MNVKPDFSKHANHATTAPAFLSVWDMHAYYGESYIVQGISFNVHEGEILALLGRNGAGKT
STLRSIARTGSPMVTKGEIWLDHQPLHKMSSHEASAAGLGLVPEDRRIIPGLTVEENLQL
AQIAPPVGWSIERLYELFPRLGERRKQEGVTLSGGEQQMLAIARALARDIKVLLLDEPYE
GLAPVIVDEIEKTLIHIKQQGITTVIVEQNAVRALELADRAVILDTGGIVFDGAAAEVLE
NEELRAEYLAI
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory