Comparing GFF1428 FitnessBrowser__psRCH2:GFF1428 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
3r5cA Pseudomonas aeruginosa dapd (pa3666) in complex with coa and succinate (see paper)
85% identity, 100% coverage: 1:343/344 of query aligns to 2:338/338 of 3r5cA
3r5bA Pseudomonas aeruginosa dapd (pa3666) in complex with l-2-aminopimelate (see paper)
85% identity, 95% coverage: 4:329/344 of query aligns to 2:321/321 of 3r5bA
3r5aA Pseudomonas aeruginosa dapd (pa3666) in complex with d-2-aminopimelate (see paper)
85% identity, 95% coverage: 4:329/344 of query aligns to 2:321/321 of 3r5aA
5e3rA Crystal structure of dapd in complex with 2-aminopimelate from corynebacterium glutamicum (see paper)
56% identity, 69% coverage: 87:325/344 of query aligns to 47:270/277 of 5e3rA
5e3qA Crystal structure of dapd in complex with succinyl-coa from corynebacterium glutamicum (see paper)
56% identity, 69% coverage: 87:325/344 of query aligns to 47:270/278 of 5e3qA
P9WP21 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
47% identity, 100% coverage: 1:343/344 of query aligns to 1:317/317 of P9WP21
3fsyB Structure of tetrahydrodipicolinate n-succinyltransferase (rv1201c;dapd) in complex with succinyl-coa from mycobacterium tuberculosis (see paper)
54% identity, 78% coverage: 58:326/344 of query aligns to 34:297/307 of 3fsyB
>GFF1428 FitnessBrowser__psRCH2:GFF1428
MSATLFSLAFGVGTQNRQGDWLEVFYAQPLLKPAGELVAAVAPLLGYAGGNQAITITTSQ
AAQLADALKPLDATQYALLTRLAESQRPLVATLLAEDAPLSSTPEAYLKLHLLSHRLAKP
HGLNLTGIFPLLPNVAWTNQGAVDLGELAERQLEARLKGDLLEVFSVDKFPKMTDYVVPA
GVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTQGPGMIEGRVSAGVFVGKGSDLGGGC
STMGTLSGGGNIVISVGEGCLIGANAGIGIPLGDRNTVESGLYITAGTKVSLLDENDQLV
KVVKARELAGQSDLLFRRNSQTGAVECKTHKSAIELNEALHAHN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory