Comparing GFF1569 FitnessBrowser__Phaeo:GFF1569 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
41% identity, 94% coverage: 5:249/262 of query aligns to 8:253/253 of 1g9xB
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
41% identity, 94% coverage: 5:249/262 of query aligns to 8:253/254 of 1g6hA
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
30% identity, 95% coverage: 5:253/262 of query aligns to 6:239/240 of 6mjpA
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
30% identity, 94% coverage: 4:250/262 of query aligns to 9:239/240 of 1ji0A
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
31% identity, 95% coverage: 2:249/262 of query aligns to 3:235/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
31% identity, 95% coverage: 2:249/262 of query aligns to 3:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
31% identity, 95% coverage: 2:249/262 of query aligns to 3:235/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
30% identity, 96% coverage: 2:253/262 of query aligns to 4:240/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
30% identity, 94% coverage: 2:248/262 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
30% identity, 94% coverage: 2:248/262 of query aligns to 3:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
30% identity, 94% coverage: 2:247/262 of query aligns to 3:233/233 of 6b8bA
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
27% identity, 88% coverage: 7:237/262 of query aligns to 23:235/378 of P69874
Sites not aligning to the query:
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
32% identity, 91% coverage: 1:238/262 of query aligns to 4:224/285 of 4yerA
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
27% identity, 94% coverage: 4:249/262 of query aligns to 9:230/353 of 1vciA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
29% identity, 95% coverage: 1:248/262 of query aligns to 2:236/241 of 4u00A
P34358 ABC transporter ced-7; Cell death protein 7 from Caenorhabditis elegans (see 2 papers)
29% identity, 95% coverage: 2:251/262 of query aligns to 546:771/1704 of P34358
Sites not aligning to the query:
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
30% identity, 91% coverage: 1:239/262 of query aligns to 4:230/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
30% identity, 91% coverage: 1:239/262 of query aligns to 4:230/263 of 7d08B
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
27% identity, 90% coverage: 1:237/262 of query aligns to 1:223/240 of 4ymuJ
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
30% identity, 91% coverage: 1:239/262 of query aligns to 2:228/253 of 6z5uK
>GFF1569 FitnessBrowser__Phaeo:GFF1569
MIVVEDLHKHFGGFHAVDGASLEIAKGSITGLIGPNGAGKTTLFNVIAGVLPPTSGRVTM
DGEDITGLPPHELFHKGLLRTFQIAHEFASMTCRENLMMVPGSQSGESLWNTWFGRKRIA
DEERALRAKADEVLEFLTISHIADLKAGQVSGGQKKLLELGRTMMVDAKIVFLDEVGAGV
NRTLLYTIADAIKRLNEERGYTFVVIEHDMEFIDRLCDPVICMAEGKKLAQGTLDEIKAN
EQVIEAYLGTGLKNKDKLEAGA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory