Comparing GFF1595 FitnessBrowser__Phaeo:GFF1595 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
26% identity, 16% coverage: 214:355/869 of query aligns to 60:199/427 of 8b01B
Sites not aligning to the query:
>GFF1595 FitnessBrowser__Phaeo:GFF1595
MTSDVQGNRPLTEEELQDLVASSDAGARNPVGSVGLFLAIVAVIWSVFQVVLASPVSNLL
LPGSVVNNSRQIHLAFAIFLAYAAYPALKSSPTDRIPVQDWILALIGTFTALYGYIFYEK
IVNSGGKGDDIDTIFAAIGLVLLFEGARRALGPAMAIVASVFMLYVFFGSSELVPDVIRW
KGASLDRAMEQMWITSEGVFGIALGVSTKFVFLFVLFGALLDKAGAGNYFIKMAFGALGH
LRGGPAKAAVVGSAATGLISGSSIANVVTTGTFTIPLMKRVGFSSEQAGSVEVASSVNGQ
IMPPVMGAAAFLMVEYVGISYVEVITHAFLPAAISYIALVYIVHLEAVKRNMPTLGNRVV
SMGRTIGGMAAFFAGFAALCYGIQYPIKAITAAIPGASGLVLSLLVVAAYLGLLWLAAGT
DDLVPDDPNAAEVELPVVGEIYKAGLHYLLPIIVLVYFLMIEQKSPGLSAFWATALLFVI
LLTQKPLKALFRGQSTLAHSFLDGVHDLWNGLIDGARNMIGIALATATAGVIVGTVTLTG
VGQVMSELVELMSGGNLILMLIMVGLLSLVLGMGLPTTANYIVVSSLMAGVVVELGAQSG
LVVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSGGDAIRTGFVAFFYSLRTVALPFV
FIFNTDLLLIDVGWVQGILVAISATIAILAFTAGTMNYFITRNRIYESVLLVLVAFALFR
PDFFMNRLMPPFASTDPAALVETVATAPAGSELRITVEGPDFDTGEQKTTTLILPVADGG
DGQAQVDGFGLMLLPEDGVVKLDEPMFGTPAQSGMDSFDFYGDEPVRLLSVQAPADQLPK
ELIFIPALLLLAMIAFLQRARASKEGVPA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory