Comparing GFF16 FitnessBrowser__psRCH2:GFF16 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
54% identity, 91% coverage: 23:274/278 of query aligns to 1:239/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
54% identity, 88% coverage: 30:274/278 of query aligns to 9:241/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
54% identity, 88% coverage: 30:274/278 of query aligns to 9:241/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
54% identity, 88% coverage: 30:274/278 of query aligns to 9:241/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
54% identity, 88% coverage: 30:274/278 of query aligns to 9:241/242 of 2oljA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
53% identity, 88% coverage: 30:274/278 of query aligns to 7:239/240 of 4ymuJ
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
54% identity, 87% coverage: 32:273/278 of query aligns to 14:255/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
54% identity, 87% coverage: 32:273/278 of query aligns to 10:251/258 of 1b0uA
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
39% identity, 94% coverage: 16:275/278 of query aligns to 9:252/378 of P69874
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
36% identity, 90% coverage: 24:273/278 of query aligns to 1:243/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
35% identity, 90% coverage: 24:273/278 of query aligns to 2:244/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
35% identity, 90% coverage: 24:273/278 of query aligns to 2:244/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
35% identity, 90% coverage: 24:273/278 of query aligns to 2:244/344 of 6cvlD
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
34% identity, 88% coverage: 33:276/278 of query aligns to 14:246/353 of 1oxvD
Sites not aligning to the query:
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
34% identity, 88% coverage: 33:276/278 of query aligns to 14:246/353 of 1oxvA
Sites not aligning to the query:
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
34% identity, 88% coverage: 33:276/278 of query aligns to 14:246/353 of 1oxuA
Sites not aligning to the query:
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
34% identity, 88% coverage: 33:276/278 of query aligns to 14:246/353 of Q97UY8
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
39% identity, 82% coverage: 24:252/278 of query aligns to 1:226/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
39% identity, 82% coverage: 24:252/278 of query aligns to 1:226/230 of 1l2tA
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
36% identity, 86% coverage: 25:262/278 of query aligns to 7:234/375 of 2d62A
>GFF16 FitnessBrowser__psRCH2:GFF16
MTTPMQSTDTLNPTPQQPEQAQPLVRFAGVTKRYGELTVLDGLDLQIEEGEKVAIIGPSG
SGKSTLLRVLMTLEGIDEGVIEVDGEPLTHMPDASGQLVPANARHLRRVRGKVGMVFQSF
NLFPHMNALQNVMEAPVQVLGLSKAEARGRAEELLAMVGLEDKLEHFPAQLSGGQQQRVA
IARALAMRPKVMLFDEVTSALDPELCGEVLNVIRRLGEAHNLTMLMVTHQMGFAREFADR
VCFFHQGRIHEQGSPDELFNNPQEERTREFLSAVNEAH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory