Comparing GFF1737 PGA1_c17610 putative alanine racemase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
3e5pB Crystal structure of alanine racemase from e.Faecalis (see paper)
29% identity, 45% coverage: 5:171/373 of query aligns to 10:179/371 of 3e5pB
Sites not aligning to the query:
3e6eA Crystal structure of alanine racemase from e.Faecalis complex with cycloserine (see paper)
29% identity, 45% coverage: 5:171/373 of query aligns to 9:178/370 of 3e6eA
Sites not aligning to the query:
>GFF1737 PGA1_c17610 putative alanine racemase
MTAPRIKIDLHKIRDNTRCLVERLKPLGITVTGVTKGVCGHPGVARAMLDGGAIGLADAR
LANVRRMRKAGLTCPILMIRTPMLSQAGQIVETCEASCNTETSVIAKLAAAALRRGISHE
IILMVEMGDGREGIMPEDLTNAALHVTRTPGVLLKGIGANFGCLADAAPTSQAMAVLSSL
ADETEGACGPFVETVSGGSSANLSWALDGGPADRINNLRIGEAILLGTDPVSGHPISGLY
TDAFTLLAEVIETKIKSKPVPLKLSDPALSALSLVPGNHWTTRSILALGLQDTDAAGLTF
PAAVIFAGATSDHIVVETTNCPLRIGSEMSMKMSYSALARAMEAPDVSKVLHRNRPLTEG
AAGSRNGRITELF
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory