SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF1737 PGA1_c17610 putative alanine racemase to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

3e5pB Crystal structure of alanine racemase from e.Faecalis (see paper)
29% identity, 45% coverage: 5:171/373 of query aligns to 10:179/371 of 3e5pB

query
sites
3e5pB
R
 
R
I
 
L
K
 
H
I
 
I
D
 
D
L
 
T
H
 
Q
K
 
A
I
 
I
R
 
T
D
 
E
N
 
N
T
 
V
R
 
Q
C
 
K
L
 
E
V
 
C
E
 
Q
R
 
R
L
 
L
K
 
-
P
 
P
L
 
E
G
 
G
I
 
T
T
 
A
V
 
L
T
 
F
G
 
A
V
 
V
T
 
V
K
|
K
G
 
A
V
 
N
-
 
G
C
x
Y
G
 
G
H
 
H
P
 
G
G
 
A
V
 
V
-
 
E
-
 
S
A
 
A
R
 
K
A
 
A
M
 
A
L
 
K
D
 
K
G
 
G
G
 
G
A
 
A
I
 
T
G
 
G
L
 
F
A
 
C
D
 
V
A
 
A
R
 
L
L
 
L
A
 
D
N
 
E
V
 
A
R
 
I
R
 
E
M
 
L
R
 
R
K
 
E
A
 
A
G
 
G
L
 
V
T
 
Q
C
 
D
P
 
P
I
 
I
L
 
L
M
 
I
I
 
L
R
 
S
T
 
V
P
 
V
M
 
D
L
 
L
S
 
A
Q
 
Y
A
 
V
G
 
P
Q
 
L
I
 
L
V
 
I
E
 
Q
T
 
Y
-
 
D
C
 
L
E
 
S
A
 
V
S
 
T
C
 
V
N
 
A
T
 
T
E
 
Q
T
 
E
S
 
W
V
 
L
I
 
E
A
 
A
K
 
A
L
 
L
A
 
Q
A
 
Q
A
 
L
A
 
T
L
 
P
R
 
E
R
 
S
G
 
N
I
 
T
S
 
P
H
 
L
E
 
R
I
 
V
I
 
H
L
 
L
M
 
K
V
 
V
E
 
D
M
 
T
G
 
G
D
 
M
G
 
G
R
|
R
E
 
I
G
 
G
I
 
F
M
 
L
-
 
T
P
 
P
E
 
E
D
 
E
L
 
T
T
 
K
N
 
Q
A
 
A
A
 
V
L
 
R
H
 
F
V
 
V
T
 
Q
R
 
S
T
 
H
P
 
K
G
 
E
V
 
F
L
 
L
L
 
W
K
 
E
G
 
G
I
 
I
G
 
F
A
 
T
N
x
H
F
 
F
G
 
S
C
 
T
L
 
-
A
 
A
D
 
D
A
 
E
A
 
I
P
 
D
T
 
T
S
 
S

Sites not aligning to the query:

3e6eA Crystal structure of alanine racemase from e.Faecalis complex with cycloserine (see paper)
29% identity, 45% coverage: 5:171/373 of query aligns to 9:178/370 of 3e6eA

query
sites
3e6eA
R
 
R
I
 
L
K
 
H
I
 
I
D
 
D
L
 
T
H
 
Q
K
 
A
I
 
I
R
 
T
D
 
E
N
 
N
T
 
V
R
 
Q
C
 
K
L
 
E
V
 
C
E
 
Q
R
 
R
L
 
L
K
 
-
P
 
P
L
 
E
G
 
G
I
 
T
T
 
A
V
 
L
T
 
F
G
 
A
V
 
V
T
 
V
K
|
K
G
 
A
V
 
N
-
 
G
C
x
Y
G
 
G
H
 
H
P
 
G
G
 
A
V
 
V
-
 
E
-
 
S
A
 
A
R
 
K
A
 
A
M
 
A
L
 
K
D
 
K
G
 
G
G
 
G
A
 
A
I
 
T
G
 
G
L
 
F
A
 
C
D
 
V
A
 
A
R
 
L
L
 
L
A
 
D
N
 
E
V
 
A
R
 
I
R
 
E
M
 
L
R
 
R
K
 
E
A
 
A
G
 
G
L
 
V
T
 
Q
C
 
D
P
 
P
I
 
I
L
 
L
M
 
I
I
x
L
R
 
S
T
 
V
P
 
V
M
 
D
L
 
L
S
 
A
Q
 
Y
A
 
V
G
 
P
Q
 
L
I
 
L
V
 
I
E
 
Q
T
 
Y
-
 
D
C
 
L
E
 
S
A
 
V
S
 
T
C
 
V
N
 
A
T
 
T
E
 
Q
T
 
E
S
 
W
V
 
L
I
 
E
A
 
A
K
 
A
L
 
L
A
 
Q
A
 
Q
A
 
L
A
 
T
L
 
P
R
 
E
R
 
S
G
 
N
I
 
T
S
 
P
H
 
L
E
 
R
I
 
V
I
 
H
L
 
L
M
 
K
V
 
V
E
 
D
M
 
T
G
 
G
D
 
M
G
 
G
R
|
R
E
 
I
G
 
G
I
 
F
M
 
L
-
 
T
P
 
P
E
 
E
D
 
E
L
 
T
T
 
K
N
 
Q
A
 
A
A
 
V
L
 
R
H
 
F
V
 
V
T
 
Q
R
 
S
T
 
H
P
 
K
G
 
E
V
 
F
L
 
L
L
 
W
K
 
E
G
 
G
I
 
I
G
 
F
A
 
T
N
x
H
F
 
F
G
 
S
C
 
T
L
 
-
A
 
A
D
 
D
A
 
E
A
 
I
P
 
D
T
 
T
S
 
S

Sites not aligning to the query:

Query Sequence

>GFF1737 PGA1_c17610 putative alanine racemase
MTAPRIKIDLHKIRDNTRCLVERLKPLGITVTGVTKGVCGHPGVARAMLDGGAIGLADAR
LANVRRMRKAGLTCPILMIRTPMLSQAGQIVETCEASCNTETSVIAKLAAAALRRGISHE
IILMVEMGDGREGIMPEDLTNAALHVTRTPGVLLKGIGANFGCLADAAPTSQAMAVLSSL
ADETEGACGPFVETVSGGSSANLSWALDGGPADRINNLRIGEAILLGTDPVSGHPISGLY
TDAFTLLAEVIETKIKSKPVPLKLSDPALSALSLVPGNHWTTRSILALGLQDTDAAGLTF
PAAVIFAGATSDHIVVETTNCPLRIGSEMSMKMSYSALARAMEAPDVSKVLHRNRPLTEG
AAGSRNGRITELF

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory