SitesBLAST
Comparing GFF1853 FitnessBrowser__WCS417:GFF1853 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
O59010 Glutamate transporter homolog; Glt(Ph); Sodium-aspartate symporter Glt(Ph); Sodium-dependent aspartate transporter from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (see 3 papers)
31% identity, 89% coverage: 20:409/437 of query aligns to 26:421/425 of O59010
- S65 (≠ T57) mutation to V: Strongly decreased chloride conductance.
- R276 (≠ S269) mutation to S: Increased rate of aspartate transport; when associated with R-395.
- RSS 276:278 (≠ SSS 269:271) binding
- M311 (≠ L304) mutation to A: Decreased dependence of aspartate binding on Na(+) concentration.
- T314 (= T307) binding
- V355 (= V348) binding
- D394 (≠ A382) binding
- M395 (≠ E383) mutation to R: Increased rate of aspartate transport; when associated with S-276.
- R397 (= R385) mutation to A: Strongly decreased affinity for aspartate.
- N401 (= N389) binding
- D405 (≠ N393) mutation to N: Strongly decreased affinity for aspartate.
6xwnB Structure of glutamate transporter homologue glttk in the presence of tboa inhibitor (see paper)
32% identity, 86% coverage: 35:411/437 of query aligns to 41:423/426 of 6xwnB
5e9sA Crystal structure of substrate-bound glutamate transporter homologue glttk (see paper)
32% identity, 86% coverage: 35:411/437 of query aligns to 41:423/427 of 5e9sA
- binding aspartic acid: R274 (≠ S269), S275 (= S270), S276 (= S271), T313 (= T307), G353 (≠ A347), V354 (= V348), A357 (= A351), G358 (= G352), D394 (≠ A382), R397 (= R385), T398 (≠ S386)
- binding decyl-beta-d-maltopyranoside: L194 (≠ R189), G198 (≠ I193), Y202 (≠ V197)
- binding sodium ion: Y87 (≠ F82), T90 (≠ V85), S91 (= S86), S276 (= S271), G305 (= G299), A306 (≠ Y300), T307 (= T301), N309 (= N303), N309 (= N303), M310 (≠ L304), D311 (= D305), S348 (= S342), I349 (≠ K343), G350 (= G344), T351 (≠ A345), N401 (= N389), V402 (≠ I390), D405 (≠ N393)
6zgbA Glutamate transporter homologue glttk in complex with a photo cage compound (see paper)
32% identity, 86% coverage: 35:411/437 of query aligns to 39:421/425 of 6zgbA
6zl4A The structure of glutamate transporter homologue glttk in complex with the photo switchable compound (cis) (see paper)
32% identity, 86% coverage: 35:411/437 of query aligns to 38:420/424 of 6zl4A
- binding decyl-beta-d-maltopyranoside: L191 (≠ R189), G195 (≠ I193), R282 (≠ Q280)
- binding (2~{S},3~{S})-2-azanyl-3-[[4-[2-(4-methoxyphenyl)hydrazinyl]phenyl]methoxy]butanedioic acid: R271 (≠ S269), S272 (= S270), S273 (= S271), M307 (≠ L304), T310 (= T307), G353 (= G350), A354 (= A351), R394 (= R385), T395 (≠ S386)
Sites not aligning to the query:
6r7rA Crystal structure of the glutamate transporter homologue glttk in complex with d-aspartate (see paper)
31% identity, 86% coverage: 35:411/437 of query aligns to 34:412/416 of 6r7rA
- binding d-aspartic acid: R263 (≠ S269), S265 (= S271), M299 (≠ L304), T302 (= T307), T340 (≠ A345), G342 (≠ A347), V343 (= V348), G347 (= G352), D383 (≠ A382), R386 (= R385), T387 (≠ S386), N390 (= N389)
- binding decyl-beta-d-maltopyranoside: V212 (≠ L218), A216 (≠ L222)
Sites not aligning to the query:
6x15A Inward-facing state of the glutamate transporter homologue gltph in complex with l-aspartate and sodium ions (see paper)
31% identity, 90% coverage: 13:407/437 of query aligns to 15:419/419 of 6x15A
- binding [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate: F46 (≠ L38), F46 (≠ L38), P75 (≠ D67), L91 (≠ V84), F95 (≠ I88), L130 (≠ I131), I133 (≠ F134), I159 (≠ V160), Y167 (≠ M168), K196 (≠ R189), G200 (≠ I193), I207 (= I200), F210 (= F203), L250 (≠ I243), I262 (≠ M255), M269 (≠ L262), T334 (≠ P327), V335 (≠ L328), G336 (≠ E329), T340 (= T333), L343 (≠ A336), M399 (≠ L387)
- binding aspartic acid: S277 (= S270), S278 (= S271), T314 (= T307), G354 (≠ A347), A358 (= A351), G359 (= G352), D394 (≠ A382), R397 (= R385), T398 (≠ S386)
- binding sodium ion: Y89 (≠ F82), T92 (≠ V85), S93 (= S86), G306 (= G299), T308 (= T301), N310 (= N303), N310 (= N303), M311 (≠ L304), D312 (= D305), S349 (= S342), I350 (≠ K343), T352 (≠ A345), N401 (= N389), V402 (≠ I390), D405 (≠ N393)
Sites not aligning to the query:
2nwwA Crystal structure of gltph in complex with tboa (see paper)
31% identity, 90% coverage: 13:404/437 of query aligns to 6:407/407 of 2nwwA
6bavA Crystal structure of gltph r397c in complex with s-benzyl-l-cysteine (see paper)
31% identity, 88% coverage: 20:405/437 of query aligns to 18:409/409 of 6bavA
6x14A Inward-facing state of the glutamate transporter homologue gltph in complex with tfb-tboa (see paper)
30% identity, 90% coverage: 13:404/437 of query aligns to 12:413/413 of 6x14A
- binding [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate: G66 (= G61), V83 (≠ L79), I157 (≠ L161), Y164 (≠ M168), K193 (≠ R189), T305 (= T301), I306 (≠ F302), I347 (≠ K343)
- binding (2~{S},3~{S})-2-azanyl-3-[[3-[[4-(trifluoromethyl)phenyl]carbonylamino]phenyl]methoxy]butanedioic acid: I13 (≠ V14), M199 (≠ S195), S275 (= S271), T311 (= T307), G356 (= G352), L384 (= L375), D391 (≠ A382), R394 (= R385)
Sites not aligning to the query:
6bauA Crystal structure of gltph r397c in complex with l-cysteine (see paper)
30% identity, 88% coverage: 20:404/437 of query aligns to 18:408/408 of 6bauA
- binding cysteine: S270 (= S271), M303 (≠ L304), T306 (= T307), A345 (≠ G346), G346 (≠ A347), V347 (= V348), G351 (= G352), D386 (≠ A382), C389 (≠ R385), T390 (≠ S386), N393 (= N389)
6bmiA Crystal structure of gltph r397c in complex with l-serine (see paper)
29% identity, 88% coverage: 20:404/437 of query aligns to 18:396/396 of 6bmiA
7awmA Structure of the thermostabilized eaat1 cryst mutant in complex with l-asp, three sodium ions and the allosteric inhibitor ucph101 (see paper)
29% identity, 85% coverage: 39:411/437 of query aligns to 57:410/412 of 7awmA
- binding 2-Amino-5,6,7,8-tetrahydro-4-(4-methoxyphenyl)-7-(naphthalen-1-yl)-5-oxo-4H-chromene-3-carbonitrile: S88 (≠ V71), G89 (= G72), G92 (= G75), A95 (= A78), V96 (≠ L79), Y99 (≠ F82), M163 (≠ V160), F167 (≠ V164), F293 (≠ I294), V297 (≠ T298)
- binding aspartic acid: S268 (= S270), S269 (= S271), T306 (= T307), G346 (≠ A347), I347 (≠ V348), A350 (= A351), G351 (= G352), D380 (≠ A382), R383 (= R385), T384 (≠ S386)
5mjuA Structure of the thermostabilized eaat1 cryst mutant in complex with the competititve inhibitor tfb-tboa and the allosteric inhibitor ucph101 (see paper)
28% identity, 85% coverage: 39:411/437 of query aligns to 49:396/397 of 5mjuA
- binding 2-Amino-5,6,7,8-tetrahydro-4-(4-methoxyphenyl)-7-(naphthalen-1-yl)-5-oxo-4H-chromene-3-carbonitrile: L72 (≠ I62), S80 (≠ V71), G81 (= G72), G84 (= G75), Y91 (≠ F82), M156 (≠ V160), F160 (≠ V164), F286 (≠ I294), V290 (≠ T298)
- binding (2~{S},3~{S})-2-azanyl-3-[[3-[[4-(trifluoromethyl)phenyl]carbonylamino]phenyl]methoxy]butanedioic acid: I64 (= I54), I148 (= I152), S262 (= S271), S263 (≠ E272), A292 (≠ Y300), T293 (= T301), M296 (≠ L304), T299 (= T307), G329 (= G344), A336 (= A351), G337 (= G352), D366 (≠ A382), R369 (= R385), N373 (= N389)
7xr4A Structure of human excitatory amino acid transporter 2 (eaat2) in complex with glutamate (see paper)
27% identity, 85% coverage: 39:408/437 of query aligns to 46:420/425 of 7xr4A
7xr6A Structure of human excitatory amino acid transporter 2 (eaat2) in complex with way-213613 (see paper)
27% identity, 85% coverage: 39:408/437 of query aligns to 47:419/424 of 7xr6A
- binding (2S)-2-azanyl-4-[[4-[2-bromanyl-4,5-bis(fluoranyl)phenoxy]phenyl]amino]-4-oxidanylidene-butanoic acid: S280 (= S270), S281 (= S271), T318 (= T307), G363 (= G352), M367 (≠ L356), V385 (≠ L375), D388 (= D378), R395 (= R385), T396 (≠ S386)
- binding dodecyl beta-D-glucopyranoside: W389 (≠ R379)
- binding cholesterol hemisuccinate: R80 (= R73), R84 (≠ K77), I95 (= I88), I252 (≠ V239)
Sites not aligning to the query:
Q10901 Excitatory amino acid transporter; Sodium-dependent glutamate/ aspartate transporter from Caenorhabditis elegans (see paper)
24% identity, 86% coverage: 39:413/437 of query aligns to 56:471/503 of Q10901
- N177 (vs. gap) modified: carbohydrate, N-linked (GlcNAc...) asparagine
- N187 (≠ K149) modified: carbohydrate, N-linked (GlcNAc...) asparagine
P31596 Excitatory amino acid transporter 2; GLT-1; Sodium-dependent glutamate/aspartate transporter 2; GLUT-R; Solute carrier family 1 member 2 from Rattus norvegicus (Rat) (see paper)
25% identity, 85% coverage: 39:408/437 of query aligns to 82:501/573 of P31596
- K298 (≠ T209) mutation K->H,R: Normal transporter activity.; mutation K->N,T: Reduced transporter activity.
- H326 (vs. gap) mutation H->N,T,K,R: No transporter activity.
P43006 Excitatory amino acid transporter 2; GLT-1; Sodium-dependent glutamate/aspartate transporter 2; Solute carrier family 1 member 2 from Mus musculus (Mouse) (see paper)
25% identity, 85% coverage: 39:408/437 of query aligns to 82:501/572 of P43006
Sites not aligning to the query:
- 38 modified: S-palmitoyl cysteine; C→S: Severely impairs glutamate uptake activity.
7vr7A Inward-facing structure of human eaat2 in the way213613-bound state (see paper)
25% identity, 83% coverage: 39:400/437 of query aligns to 39:395/402 of 7vr7A
- binding (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en: S57 (≠ T57), L58 (≠ V58), L65 (≠ M65), V339 (≠ K343), G340 (= G344), S343 (≠ A347), I344 (≠ V348)
- binding cholesterol: W188 (≠ R196), I227 (vs. gap), F250 (= F252), W257 (≠ L262), M379 (≠ C384), S382 (≠ L387)
- binding (2S)-2-azanyl-4-[[4-[2-bromanyl-4,5-bis(fluoranyl)phenoxy]phenyl]amino]-4-oxidanylidene-butanoic acid: S266 (= S271), M300 (≠ L304), T303 (= T307), Y306 (= Y310), G348 (= G352), L349 (≠ F353), M352 (≠ L356), I366 (≠ M371), L369 (≠ I374), V370 (≠ L375), D373 (= D378), D377 (≠ A382), R380 (= R385), T381 (≠ S386), N384 (= N389)
Sites not aligning to the query:
Query Sequence
>GFF1853 FitnessBrowser__WCS417:GFF1853
MTIRKLLGTLYIQVLIAIALGVLIGHQWPQIGIDLKPLGDGFIKLIKMIIGPIIFCTVVS
GITSMHDVKQVGRVGGKALLYFEVVSTIALLIGILAAHLLHPGVGFNIDVKTLDSSAIAG
FVGQAEHGEGITGFLLHVIPATFFDAFSKGEILPVLFVSVLFGVGLVMVGEKGRPLVGVI
NQASEVFFRIVGIISRVAPIGAFGAIAFTIGKYGVGSLLPLLKLVGTFYVTAFFFIAVVL
GSIARYAGFSIFKLMGYIKSELLIVLGTSSSESALPQLIQKLESLGASKGVVGIVVPTGY
TFNLDGTNIYMTLAVLFLAQATNIHLPLEQQLTLLAVAMLTSKGAGAVVGAGFVALAASL
AVVPTVPVAAMVLILGVDRFMAECRSLTNIIGNAVAALVVAAWEGELDREKMAPIALKRG
RHARAAEAAAQAKMAAE
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory