Comparing GFF1892 FitnessBrowser__WCS417:GFF1892 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
2x65B Crystal structure of t. Maritima gdp-mannose pyrophosphorylase in complex with mannose-1-phosphate. (see paper)
35% identity, 72% coverage: 11:359/486 of query aligns to 6:334/334 of 2x65B
2x65A Crystal structure of t. Maritima gdp-mannose pyrophosphorylase in complex with mannose-1-phosphate. (see paper)
35% identity, 72% coverage: 11:359/486 of query aligns to 6:334/334 of 2x65A
2x60A Crystal structure of t. Maritima gdp-mannose pyrophosphorylase in complex with gtp. (see paper)
35% identity, 71% coverage: 11:357/486 of query aligns to 6:332/333 of 2x60A
2x5zA Crystal structure of t. Maritima gdp-mannose pyrophosphorylase in complex with gdp-mannose. (see paper)
35% identity, 71% coverage: 11:357/486 of query aligns to 6:332/333 of 2x5zA
>GFF1892 FitnessBrowser__WCS417:GFF1892
MNTLNGLIPCIISGGSGTRLWPVSRQNMPKPFMRMRDGQSLLQKTFQRAAKLPGVESVLT
VTNRDLLFRTLDDYRLVNKAHLPLDLLLEPFGRNTAAAIAVAALHVQEHFGGEAQLLVMP
ADHLILNEVAFAEAVTQARDLAEAGYLVTFGIQPDQPETGFGYIEQGERLGTGNRVKRFV
EKPDLATAQAYLDGGKHLWNAGMFCFKASTLVDELATHAPDVLEAARAALDHSQSLQNKT
SRQRELDSEAFGSAPDISIDVALMEKSTQVAVVPCDIGWSDIGSWEALRQLTPSDAHGNQ
VNGEAILHDVHNCYIDSPKRVLGAVGVRDLIIVDTPDALLIADAHRSQDVRYIVAELKRQ
NHPAYSLHRTVTRPWGTYTVLEESSRFKIKRIVVKPQASLSLQMHHHRSEHWVVVSGAAQ
ITNGEREFLINANESTYIPAGHKHRLTNPGIIDLVMIEVQSGEYLGEDDIVRFDDIYGRA
PADVKK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory