Comparing GFF1903 FitnessBrowser__psRCH2:GFF1903 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
Q54VI3 Glutamate dehydrogenase 2; NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Dictyostelium discoideum (Social amoeba) (see paper)
24% identity, 31% coverage: 682:1185/1616 of query aligns to 423:896/1042 of Q54VI3
>GFF1903 FitnessBrowser__psRCH2:GFF1903
MAFFSAASKADFQQQLQTALAQHVDSKILPQLNLFAEQFFGIVALPELTERRMSDLVGST
LASWRLLERFEPSTPEVQVFNPDFEKHGWQSTHSVVEVLHPDMPFLVDSVRMELTRRGYS
IHTLQTSVLQVRRAADGSLLELLPKDERAADSHAESLIFVEIDRCASPSALRELEQSLLG
VLADVRQVVGDFAAMKGKAVELQGRLEQVNLSIDGDELDEIRDFMRWLADDHFTFLGYEE
FSVQEQADGGRIFYDESSLLGLSRTMRTGLSEEEQSLTAQSMSYLREPLLLSFAKAAMPS
RVHRPAYPDFVSVREFDEAGRVVRECRFLGLFTSSVYTQSVRRIPFIRRKVETVVQRANF
GSSAHLAKELVQVLEVLPRDELFQAPIDELFENAIAIVQIQERNRLRLFLRFDPYRRFCY
CLVYVPRDSYSTETRLKIQQVLQERLEASDCEFSTYFSESVLTRVQFILRLDPSRAVQVD
PVRLEQEVLQACRTWQDDYQSLVVERFGEAKGTHLLSEFPKGFPAGYRERFSPQSATVDM
QHVLDLSEERPLVMSFYQPITAEENRLHCKLYHLNTPLPLSDILPIMENLGLRVLGEFPF
RLRNRSGREYWIHDFAFTYAEGLEIDLLEINEALQDAFIHIYGGAAENDAFNRLVLTAGL
AWREVALLRAYARYLKQIRMGFDLGYIASALLNHTDIARELVRLFKMRFYLARKLGDEDL
ADKQQRLEQAILSALDDVAVLNEDRILRRYLALIQATLRTNFYQPDANGRPKPYFSFKLD
PRAIPEMPRPAPMYEIFVYSPRVEGVHLRGGKVARGGLRWSDREEDYRTEVLGLVKAQQV
KNAVIVPGGAKGGFVPRRLPTTGTRDDIQAEAIACYRIFISGLLDITDNLREGQVAPPAN
VLRYDGDDPYLVVAADKGTASFSDIANGIAAEYDFWLGDAFASGGSAGYDHKKMGITARG
AWVSVQRHFRERGINVQSDVISVIGIGDMAGDVFGNGLLMSETLQLVAAFNHLHIFIDPN
PDPARSFLERKRLFDLPRSSWTDYDASLISEGGGIFPRSAKRVQISPQMKERFAIEADQL
TPAELINALLKAPVDLLWNGGIGTYVKSSSESHAEVGDKANDAVRVNGAELRAKVVGEGG
NLGMTQLGRVEYALHGGSSNTDFIDNAGGVDCSDHEVNIKILLNEVVSAGDMTAKQRNQL
LFEMTDAVAELVLQNNYKQTQALSQAQHRSRERAAEYVRLINALEAAGQLDRALEFLPSD
EALAERASIGKGLTRPELSVLISYSKIELKKALLDSRVPDDDYLAREMDSAFPQQLAEHF
RAAMLQHRLKREIVATQIANDLVNNMGITFVQRLNEATGMSAANVAGAYVIVRDIFHLPH
WFRQIEALDHKVPAELQLSLMDELMRLGRRATRWFLRNRRSELDAARDVAHFGPRVAALG
LKLDELLQGSTRDHWQERYRRYTEAGVPELLARMVAGTNHLYTLLPILEAADETGQVPAQ
VAAAYFAVGGALELPWYLHQLTNMPVGNNWQALAREGFRDDLDSQQRSITVSVLQMENGA
ESISERVDAWLAQRPVPLARWRSMLAELRNASGNDYAIYAVASRELQGLAQSARHG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory