Comparing GFF195 FitnessBrowser__Phaeo:GFF195 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
33% identity, 30% coverage: 284:406/410 of query aligns to 94:215/215 of 4ymtC
Sites not aligning to the query:
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
34% identity, 29% coverage: 284:402/410 of query aligns to 94:211/214 of 4ymwC
>GFF195 FitnessBrowser__Phaeo:GFF195
MSTLTDPPKAQFQLSMLVNDTRYRSLTFQAIAALVLALAIWYLGNNLIQNLRAAGLNISY
GFLGDPSGYDINQRLIEYDSQSSHARAAVVGVLNTLLVAVLACITATIFGVVAGVLRLSN
NWLVSKLMAVYVEIFRNIPVLIWIIIIFTIMTAVMPGPREFRGDNATSSMLFDLFAFTNR
GVYIPMPWFESGFFASGALNWLVVIAALVGSFLVMRRIEANATKTQEKTGVRPKTKLIAL
GVWLVPLALVLFVMGLSWEVPELKGFNFKGGIKIGGPLIALWFALSIYTGAFIAENVRAG
IQAINKGQTEAAAALGLRPGRIMNLVVLPQALRVIIPPLISNFLNITKNSSLAIAVGYAD
ITATLGGITLNQTGRAIECVLLLMLFYLTASLLISMVMNVYNASVKLKER
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory