Comparing GFF1959 FitnessBrowser__Phaeo:GFF1959 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3nioA Crystal structure of pseudomonas aeruginosa guanidinobutyrase (see paper)
62% identity, 99% coverage: 3:315/315 of query aligns to 1:316/316 of 3nioA
Q9I3S3 Guanidinobutyrase; EC 3.5.3.7 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
62% identity, 99% coverage: 3:315/315 of query aligns to 4:319/319 of Q9I3S3
Q9I6K2 Guanidinopropionase; EC 3.5.3.17 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
48% identity, 98% coverage: 2:309/315 of query aligns to 3:310/318 of Q9I6K2
3niqA Crystal structure of pseudomonas aeruginosa guanidinopropionase (see paper)
48% identity, 97% coverage: 3:309/315 of query aligns to 1:307/315 of 3niqA
3nipB Crystal structure of pseudomonas aeruginosa guanidinopropionase complexed with 1,6-diaminohexane (see paper)
48% identity, 98% coverage: 2:309/315 of query aligns to 1:308/316 of 3nipB
P0DJQ3 Proclavaminate amidinohydrolase; Proclavaminic acid amidino hydrolase; EC 3.5.3.22 from Streptomyces clavuligerus (see paper)
43% identity, 93% coverage: 15:306/315 of query aligns to 11:302/313 of P0DJQ3
1gq6B Proclavaminate amidino hydrolase from streptomyces clavuligerus (see paper)
43% identity, 93% coverage: 15:306/315 of query aligns to 3:294/301 of 1gq6B
4dz4B X-ray crystal structure of a hypothetical agmatinase from burkholderia thailandensis (see paper)
41% identity, 93% coverage: 16:308/315 of query aligns to 28:314/323 of 4dz4B
7lolA The structure of agmatinase from e. Coli at 1.8 a displaying urea and agmatine (see paper)
41% identity, 86% coverage: 22:291/315 of query aligns to 9:272/294 of 7lolA
7lbaB E. Coli agmatinase (see paper)
41% identity, 86% coverage: 22:291/315 of query aligns to 26:289/310 of 7lbaB
P60651 Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli (strain K12) (see paper)
41% identity, 86% coverage: 22:291/315 of query aligns to 19:282/306 of P60651
7loxA The structure of agmatinase from e. Coli at 3.2 a displaying guanidine in the active site (see paper)
40% identity, 86% coverage: 22:291/315 of query aligns to 5:262/284 of 7loxA
7esrA Crystal structure of synechocystis sp pcc6803 guanidinium hydrolase (r32) (see paper)
33% identity, 96% coverage: 8:309/315 of query aligns to 46:354/378 of 7esrA
3lhlA Crystal structure of a putative agmatinase from clostridium difficile
32% identity, 87% coverage: 35:309/315 of query aligns to 6:271/276 of 3lhlA
Q57757 Agmatinase; EC 3.5.3.11 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
32% identity, 87% coverage: 37:309/315 of query aligns to 24:283/284 of Q57757
1wogA Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily (see paper)
33% identity, 93% coverage: 16:307/315 of query aligns to 7:296/303 of 1wogA
P46637 Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; AtARGAH1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
33% identity, 85% coverage: 37:305/315 of query aligns to 66:336/342 of P46637
Sites not aligning to the query:
6vsuE Arginase from arabidopsis thaliana in complex with ornithine (see paper)
33% identity, 85% coverage: 37:305/315 of query aligns to 42:312/318 of 6vsuE
6vstD Arginase from medicago truncatula in complex with ornithine (see paper)
35% identity, 85% coverage: 37:305/315 of query aligns to 44:314/320 of 6vstD
6vstA Arginase from medicago truncatula in complex with ornithine (see paper)
35% identity, 85% coverage: 37:305/315 of query aligns to 41:311/317 of 6vstA
>GFF1959 FitnessBrowser__Phaeo:GFF1959
MTDFNQPISGNDLARFSGPNTFMRLPQATSLDGLDVAILGVPMDIGTSWRSGTRFGPKQI
RAESAMIRPYNMTSGAAPFDSLNIGDIGDLAINTFSLPDSLRIIQESYSAILASDVTPVA
MGGDHSITLPILRAVAEKYGPVALVHVDAHADVNDDMFGERETHGTVFRRAYEEGLIVAD
KTYQIGLRGTGYGADDFKEAQRWGFQHFPASELWNRSLHGMGAEIRRDIGNRPVYVSYDI
DSLDPAYAPGTGTPEIGGLTTPQALELIRALRGLNIVGCDMVEVSPPYDTSGNTALTAAN
LLYELLCVLPGVTTK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory