SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF196 FitnessBrowser__psRCH2:GFF196 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
28% identity, 19% coverage: 204:361/850 of query aligns to 60:211/427 of 8b01B

query
sites
8b01B
F
 
F
V
 
V
L
 
L
F
 
T
G
 
G
A
 
H
L
 
L
L
 
M
E
 
N
R
 
S
A
 
A
G
 
G
A
 
I
G
 
T
H
 
E
Y
 
R
F
 
I
I
 
F
Q
 
N
L
 
F
A
 
A
F
 
K
S
 
A
M
 
M
L
 
V
G
 
G
H
 
H
F
 
I
R
 
T
G
 
G
G
 
S
P
 
L
A
 
G
K
 
H
A
 
V
A
 
N
V
 
I
V
 
L
A
 
A
S
 
S
G
 
L
M
 
L
T
 
F
G
x
S
L
 
G
I
 
M
S
|
S
G
|
G
S
 
S
S
 
A
I
 
L
A
 
A
N
 
D
V
 
A
V
 
G
T
 
G
T
 
L
G
 
G
T
 
Q
F
 
L
T
 
E
I
 
I
P
 
K
M
 
S
M
 
M
K
 
R
R
 
D
T
 
A
G
 
K
F
 
Y
S
 
D
A
 
D
E
 
D
K
 
F
A
 
A
G
 
G
A
 
G
V
 
L
E
 
T
V
 
A
A
 
A
S
 
S
S
 
C
V
 
I
N
 
I
G
|
G
Q
 
P
I
 
L
M
x
V
P
|
P
P
|
P
V
 
S
M
 
I
G
 
P
A
 
L
A
 
V
A
 
I
F
 
Y
L
 
G
M
 
V
V
 
V
E
 
S
Y
 
N
V
 
T
G
 
S
I
 
I
P
 
G
Y
 
-
V
 
-
E
 
A
V
 
L
I
 
F
K
 
L
H
 
A
A
 
G
F
 
A
L
 
I
P
 
P
A
 
G
L
 
L
I
 
L
S
 
C
Y
 
C
I
 
I
A
 
A
L
 
L
I
 
C
Y
 
I
I
 
M
V
 
T
H
 
Y
L
 
F
E
 
I
S
 
A
M
 
K
K
 
K
L
 
R
G
 
G
L
 
Y
Q
 
M
A
 
T
L
 
L
P
 
P
R
 
R
A
 
A
N
 
S
V
 
-
A
 
-
K
 
-
P
 
-
W
 
R
M
 
K
Q
 
E
R
 
R
L
 
L
I
 
I
G
 
A
F
 
F

Sites not aligning to the query:

Query Sequence

>GFF196 FitnessBrowser__psRCH2:GFF196
MQDKQLSTEELIAQDVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFVLGFGVLNDTE
TRSIHLAFALLLAFLAYPAFKRSPRDRVPLVDIALGLVAAASAAYLFIAYSQLAQRPGNL
TTMDLVTACIGIPLLLEATRRALGPPLAIIALVFLVYSVAGPWMPGLLAHRGVSFTALAN
HQWITTEGVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAV
VASGMTGLISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAA
FLMVEYVGIPYVEVIKHAFLPALISYIALIYIVHLESMKLGLQALPRANVAKPWMQRLIG
FVFGAALISGLSLGVYYGLGWLKPLLGDSALWVIGALLAVVYLGLLKIAASNPPLPHEDP
NMPLEKLPETRPVLLSGLHFLLPVVVLVWCLMIERLSPGLSAFWGSVMLVIILLTQRPLL
SWMRHDRSHPDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLAD
LVELLSMGNLLLMLLLTAFLSLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIA
VHLFVFYFGIMADVTPPVGLASFAAAAVSKGDPIRTGVTAFYYSLRTAALPFLFIFNTDL
LLIGVDFWHGVLIFIVATIAMLVFAAGTQGYFLVRSRWYESVLLLLVAFTLFRPGFWMDM
IHDPYQEIPPAQLVEALGNVDEDSQLRLRVLGEDAVGDPREFVLLLAIPDGASGEEKLEK
IGLLTYEEDGKLLVDSVTFGSPAAEAGLEFDQQILSVRAPTDRWPKELMWAPGFLLFALI
VWMQRRRRQR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory