Comparing GFF196 FitnessBrowser__psRCH2:GFF196 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
28% identity, 19% coverage: 204:361/850 of query aligns to 60:211/427 of 8b01B
Sites not aligning to the query:
>GFF196 FitnessBrowser__psRCH2:GFF196
MQDKQLSTEELIAQDVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFVLGFGVLNDTE
TRSIHLAFALLLAFLAYPAFKRSPRDRVPLVDIALGLVAAASAAYLFIAYSQLAQRPGNL
TTMDLVTACIGIPLLLEATRRALGPPLAIIALVFLVYSVAGPWMPGLLAHRGVSFTALAN
HQWITTEGVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAV
VASGMTGLISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAA
FLMVEYVGIPYVEVIKHAFLPALISYIALIYIVHLESMKLGLQALPRANVAKPWMQRLIG
FVFGAALISGLSLGVYYGLGWLKPLLGDSALWVIGALLAVVYLGLLKIAASNPPLPHEDP
NMPLEKLPETRPVLLSGLHFLLPVVVLVWCLMIERLSPGLSAFWGSVMLVIILLTQRPLL
SWMRHDRSHPDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLAD
LVELLSMGNLLLMLLLTAFLSLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIA
VHLFVFYFGIMADVTPPVGLASFAAAAVSKGDPIRTGVTAFYYSLRTAALPFLFIFNTDL
LLIGVDFWHGVLIFIVATIAMLVFAAGTQGYFLVRSRWYESVLLLLVAFTLFRPGFWMDM
IHDPYQEIPPAQLVEALGNVDEDSQLRLRVLGEDAVGDPREFVLLLAIPDGASGEEKLEK
IGLLTYEEDGKLLVDSVTFGSPAAEAGLEFDQQILSVRAPTDRWPKELMWAPGFLLFALI
VWMQRRRRQR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory