SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF197 FitnessBrowser__psRCH2:GFF197 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1us4A Putative glur0 ligand binding core with l-glutamate (see paper)
37% identity, 92% coverage: 27:321/321 of query aligns to 2:297/297 of 1us4A

query
sites
1us4A
E
 
Q
K
 
E
F
 
F
V
 
I
T
 
T
I
 
I
G
 
G
T
 
S
G
 
G
G
 
S
Q
 
T
T
 
T
G
 
G
V
|
V
Y
|
Y
Y
 
F
V
 
P
A
 
V
G
 
A
Q
 
T
S
 
G
I
 
I
C
 
A
R
 
K
F
 
L
V
 
V
N
 
N
R
 
D
N
 
A
A
 
N
E
 
V
N
 
G
I
 
I
K
 
R
C
 
A
N
 
N
A
 
A
P
 
R
A
 
S
S
 
T
G
 
G
G
 
G
G
x
S
V
 
V
A
 
A
N
 
N
V
 
I
N
 
N
G
 
A
L
 
I
R
 
N
S
 
A
G
 
G
E
 
E
F
 
F
N
 
E
F
 
M
G
 
A
I
 
L
M
 
A
Q
|
Q
S
 
N
D
 
D
H
 
I
Q
 
A
Y
 
Y
K
 
Y
A
 
A
M
 
Y
E
 
Q
G
 
G
V
 
C
A
 
C
P
 
I
F
 
P
E
 
A
K
 
F
E
 
E
G
 
G
K
 
K
-
 
P
M
 
V
D
 
K
D
 
T
I
 
I
R
 
R
A
 
A
V
 
L
F
 
A
S
 
A
L
 
L
Q
 
Y
S
 
P
E
|
E
V
 
V
F
 
V
T
 
H
V
 
V
L
 
V
A
 
A
R
 
R
R
 
K
S
 
D
A
 
A
N
 
G
I
 
I
K
 
R
G
 
T
L
 
V
D
 
A
D
 
D
L
 
L
K
 
K
G
 
G
K
 
K
R
 
R
V
 
V
N
 
V
I
 
V
G
 
G
N
 
D
P
 
V
G
 
G
S
|
S
G
|
G
Q
x
T
R
 
E
D
 
Q
T
 
N
L
 
A
E
 
R
E
 
Q
I
 
I
M
 
L
K
 
E
V
 
A
K
 
Y
G
 
G
W
 
L
D
 
T
Q
 
F
S
 
D
V
 
D
F
 
L
S
 
G
L
 
Q
A
 
A
A
 
I
E
 
R
L
 
V
K
 
S
P
 
A
A
 
S
E
 
Q
Q
 
G
A
 
I
S
 
Q
A
 
L
L
 
M
G
 
Q
D
 
D
N
 
K
N
 
R
I
 
A
D
 
D
A
 
A
M
 
L
T
 
F
Y
 
Y
F
x
T
V
|
V
G
 
G
H
 
L
P
 
G
N
 
A
G
 
S
A
 
A
I
 
I
Q
 
Q
E
 
Q
A
 
L
T
 
A
T
 
L
T
 
T
T
 
T
D
 
P
A
 
I
V
 
A
L
 
L
V
 
V
P
 
A
I
 
V
T
 
D
G
 
L
P
 
N
E
 
R
I
 
I
D
 
Q
K
 
A
L
 
I
L
 
A
E
 
K
E
 
K
K
 
Y
S
 
P
Y
 
F
Y
 
Y
T
 
V
K
 
G
A
 
F
E
 
N
I
 
I
P
 
P
G
 
G
G
 
G
L
 
T
Y
 
Y
K
 
K
G
 
G
N
 
V
D
 
D
Q
 
V
A
 
T
T
 
T
Q
 
P
S
 
T
I
 
V
G
 
A
G
 
V
K
 
Q
A
 
A
V
 
M
L
 
L
S
 
I
T
 
A
T
 
S
S
 
E
K
 
R
V
 
L
D
 
S
A
 
E
E
 
E
V
 
T
V
 
V
Y
 
Y
Q
 
K
L
 
F
V
 
M
K
 
K
S
 
A
V
 
V
F
 
F
E
 
G
N
 
N
I
 
L
E
 
E
R
 
A
F
 
F
Q
 
K
R
 
K
L
 
I
H
 
H
P
 
P
A
 
N
F
 
L
K
 
E
D
 
R
L
 
F
K
 
F
P
 
G
E
 
L
E
 
E
M
 
K
I
 
A
E
 
V
V
 
K
G
 
G
L
 
L
S
 
P
A
 
I
P
 
P
L
 
L
H
 
H
E
 
P
G
 
G
A
 
A
E
 
E
R
 
R
Y
 
F
Y
 
Y
K
 
K
E
 
E
R
 
A
G
 
G
W
 
V
L
|
L

Query Sequence

>GFF197 FitnessBrowser__psRCH2:GFF197
MKGKSLAWIFTAALAGTGLSGVVQAQEKFVTIGTGGQTGVYYVAGQSICRFVNRNAENIK
CNAPASGGGVANVNGLRSGEFNFGIMQSDHQYKAMEGVAPFEKEGKMDDIRAVFSLQSEV
FTVLARRSANIKGLDDLKGKRVNIGNPGSGQRDTLEEIMKVKGWDQSVFSLAAELKPAEQ
ASALGDNNIDAMTYFVGHPNGAIQEATTTTDAVLVPITGPEIDKLLEEKSYYTKAEIPGG
LYKGNDQATQSIGGKAVLSTTSKVDAEVVYQLVKSVFENIERFQRLHPAFKDLKPEEMIE
VGLSAPLHEGAERYYKERGWL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory