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Comparing GFF1971 FitnessBrowser__psRCH2:GFF1971 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6g1oA Structure of pseudomonas aeruginosa isocitrate lyase, icl (see paper)
91% identity, 92% coverage: 1:486/531 of query aligns to 1:486/486 of 6g1oA
- active site: D184 (= D184), Q211 (= Q211), C222 (= C222), H224 (= H224), R260 (= R260), S382 (= S382), S384 (= S384)
- binding calcium ion: D184 (= D184), D186 (= D186)
- binding glyoxylic acid: D117 (= D117), D186 (= D186), E213 (= E213), S217 (= S217)
P28240 Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
26% identity, 82% coverage: 98:530/531 of query aligns to 103:550/557 of P28240
- K216 (≠ Q221) mutation to R: Reduces activity by 45%; when associated with L-220.
- M220 (≠ Q225) mutation to L: Reduces activity by 45%; when associated with R-216.
Sites not aligning to the query:
- 53 T→A: Abolishes short-term enzyme inactivation by glucose addition.
7cmyC Isocitrate lyase from bacillus cereus atcc 14579 in complex with magnessium ion, glyoxylate, and succinate
27% identity, 86% coverage: 67:524/531 of query aligns to 60:414/417 of 7cmyC
P0A9G6 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli (strain K12) (see 3 papers)
28% identity, 83% coverage: 67:507/531 of query aligns to 65:410/434 of P0A9G6
- SGW 91:93 (= SGW 101:103) binding
- D157 (= D184) binding
- C195 (= C222) active site, Proton acceptor; mutation to A: Large decrease in activity.; mutation to S: Large decrease in activity.
- A219 (= A246) mutation to C: Isocitrate lyase activity is reduced compared to the wild-type.
- R232 (= R260) binding
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
7rbxC Crystal structure of isocitrate lyase and phosphorylmutase:isocitrate lyase from brucella melitensis biovar abortus 2308 bound to itaconic acid (see paper)
27% identity, 90% coverage: 28:506/531 of query aligns to 25:398/425 of 7rbxC
1igwC Crystal structure of the isocitrate lyase from the a219c mutant of escherichia coli (see paper)
27% identity, 83% coverage: 67:507/531 of query aligns to 64:409/416 of 1igwC
- active site: Y88 (= Y99), D107 (= D117), D156 (= D184), E158 (≠ D186), H183 (≠ Q211), E185 (= E213), C194 (= C222), R231 (= R260), E288 (= E352), K311 (≠ A375), S318 (= S382), S320 (= S384)
- binding pyruvic acid: S90 (= S101), G91 (= G102), W92 (= W103), D156 (= D184), R231 (= R260), T350 (= T451)
6lrtA Crystal structure of isocitrate lyase (caur_3889) from chloroflexus aurantiacus in complex with isocitrate and manganese ion
26% identity, 92% coverage: 26:514/531 of query aligns to 27:406/423 of 6lrtA
5e9gD Structural insights of isocitrate lyases from magnaporthe oryzae (see paper)
27% identity, 83% coverage: 75:514/531 of query aligns to 81:486/486 of 5e9gD
- active site: Y100 (= Y99), D119 (= D117), D173 (= D184), D175 (= D186), H200 (≠ Q211), E202 (= E213), C211 (= C222), H213 (= H224), R248 (= R260), E363 (= E352), Q386 (≠ A375), S393 (= S382), S395 (= S384)
- binding glyoxylic acid: Y100 (= Y99), S102 (= S101), G103 (= G102), W104 (= W103), D173 (= D184), H200 (≠ Q211), R248 (= R260), T424 (= T451)
- binding glycerol: C211 (= C222), G212 (= G223), H213 (= H224), R248 (= R260)
7ebeA Crystal structure of isocitrate lyase-1 from candida albicans (see paper)
26% identity, 91% coverage: 50:530/531 of query aligns to 60:543/544 of 7ebeA
- active site: Y99 (= Y99), D118 (= D117), D172 (= D184), D174 (= D186), H199 (≠ Q211), E201 (= E213), C210 (= C222), H212 (= H224), R247 (= R260), E402 (= E352), Q425 (≠ A375), S432 (= S382), S434 (= S384)
- binding magnesium ion: G102 (= G102), W103 (= W103), D172 (= D184)
5e9gC Structural insights of isocitrate lyases from magnaporthe oryzae (see paper)
27% identity, 81% coverage: 75:506/531 of query aligns to 81:493/499 of 5e9gC
- active site: Y100 (= Y99), D119 (= D117), D173 (= D184), D175 (= D186), H200 (≠ Q211), E202 (= E213), C211 (= C222), H213 (= H224), R248 (= R260), E377 (= E352), Q400 (≠ A375), S407 (= S382), S409 (= S384)
- binding glyoxylic acid: Y100 (= Y99), S102 (= S101), W104 (= W103), R248 (= R260)
5e9gB Structural insights of isocitrate lyases from magnaporthe oryzae (see paper)
26% identity, 83% coverage: 75:514/531 of query aligns to 81:525/525 of 5e9gB
- active site: Y100 (= Y99), D119 (= D117), D173 (= D184), D175 (= D186), H200 (≠ Q211), E202 (= E213), C211 (= C222), H213 (= H224), R248 (= R260), E401 (= E352), Q424 (≠ A375), S431 (= S382), S433 (= S384)
- binding glyoxylic acid: Y100 (= Y99), S102 (= S101), G103 (= G102), W104 (= W103), D173 (= D184), T463 (= T451)
- binding glycerol: C211 (= C222), G212 (= G223), H213 (= H224), R248 (= R260), E401 (= E352), N429 (= N380), T463 (= T451)
P9WKK7 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
26% identity, 82% coverage: 96:531/531 of query aligns to 86:428/428 of P9WKK7
- SGW 91:93 (= SGW 101:103) binding
- D153 (= D184) binding
- C191 (= C222) mutation to S: Adopts a conformation almost identical to the wild-type.
- GH 192:193 (= GH 223:224) binding
- R228 (= R260) binding
- NCSPS 313:317 (≠ NNSPS 380:384) binding
- K334 (≠ R437) modified: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-Cter in protein Pup)
- T347 (= T451) binding
6xppA Crystal structure of itaconate modified mycobaterium tuberculosis isocitrate lyase (see paper)
27% identity, 77% coverage: 96:506/531 of query aligns to 85:402/426 of 6xppA
- active site: Y88 (= Y99), D107 (= D117), D152 (= D184), E154 (≠ D186), H179 (≠ Q211), E181 (= E213), C190 (= C222), H192 (= H224), R227 (= R260), E284 (= E352), Q307 (≠ A375), S314 (= S382), S316 (= S384)
- binding 2-methylidenebutanedioic acid: W92 (= W103), C190 (= C222), H192 (= H224), R227 (= R260), N312 (= N380), S314 (= S382), S316 (= S384), T346 (= T451)
- binding magnesium ion: A275 (≠ Q343), A278 (= A346), Q307 (≠ A375)
6c4aA Crystal structure of 3-nitropropionate modified isocitrate lyase from mycobacterium tuberculosis with pyruvate (see paper)
27% identity, 77% coverage: 96:506/531 of query aligns to 87:404/428 of 6c4aA
- active site: Y90 (= Y99), D109 (= D117), D154 (= D184), E156 (≠ D186), H181 (≠ Q211), E183 (= E213), C192 (= C222), H194 (= H224), R229 (= R260), E286 (= E352), Q309 (≠ A375), S316 (= S382), S318 (= S384)
- binding 3-nitropropanoic acid: Y357 (≠ L460), S358 (= S461), R380 (≠ Q485)
- binding magnesium ion: A277 (≠ Q343), A280 (= A346), Q309 (≠ A375)
- binding pyruvic acid: Y90 (= Y99), S92 (= S101), G93 (= G102), W94 (= W103), D154 (= D184), C192 (= C222), R229 (= R260), W284 (= W350), T348 (= T451)
7rb1A Isocitrate lyase-1 from mycobacterium tuberculosis covalently modified by 5-descarboxy-5-nitro-d-isocitric acid (see paper)
27% identity, 77% coverage: 96:506/531 of query aligns to 86:403/427 of 7rb1A
- binding dihydroxyacetic acid: Y89 (= Y99), S91 (= S101), W93 (= W103), D153 (= D184), R228 (= R260), T347 (= T451)
- binding (3E)-3-(hydroxyimino)propanoic acid: C191 (= C222), G192 (= G223), H193 (= H224), R228 (= R260), S315 (= S382), S317 (= S384), T347 (= T451)
- binding magnesium ion: A276 (≠ Q343), A279 (= A346), Q308 (≠ A375)
6wsiA Intact cis-2,3-epoxysuccinic acid bound to isocitrate lyase-1 from mycobacterium tuberculosis (see paper)
27% identity, 77% coverage: 96:506/531 of query aligns to 86:403/427 of 6wsiA
- active site: Y89 (= Y99), D108 (= D117), D153 (= D184), E155 (≠ D186), H180 (≠ Q211), E182 (= E213), C191 (= C222), H193 (= H224), R228 (= R260), E285 (= E352), Q308 (≠ A375), S315 (= S382), S317 (= S384)
- binding magnesium ion: A276 (≠ Q343), A279 (= A346), Q308 (≠ A375)
- binding (2R,3S)-oxirane-2,3-dicarboxylic acid: C191 (= C222), G192 (= G223), H193 (= H224), R228 (= R260), E285 (= E352), N313 (= N380), S315 (= S382), S317 (= S384), T347 (= T451)
6vb9A Covalent adduct of cis-2,3-epoxysuccinic acid with isocitrate lyase-1 from mycobacterium tuberculosis (see paper)
27% identity, 77% coverage: 96:506/531 of query aligns to 86:403/427 of 6vb9A
- active site: Y89 (= Y99), D108 (= D117), D153 (= D184), E155 (≠ D186), H180 (≠ Q211), E182 (= E213), C191 (= C222), H193 (= H224), R228 (= R260), E285 (= E352), Q308 (≠ A375), S315 (= S382), S317 (= S384)
- binding magnesium ion: A276 (≠ Q343), A279 (= A346), Q308 (≠ A375)
- binding oxalic acid: Y89 (= Y99), S91 (= S101), G92 (= G102), W93 (= W103), D153 (= D184), C191 (= C222), R228 (= R260), W283 (= W350), T347 (= T451)
5dqlA Crystal structure of 2-vinyl glyoxylate modified isocitrate lyase from mycobacterium tuberculosis (see paper)
27% identity, 77% coverage: 96:506/531 of query aligns to 86:403/427 of 5dqlA
- active site: Y89 (= Y99), D108 (= D117), D153 (= D184), E155 (≠ D186), H180 (≠ Q211), E182 (= E213), C191 (= C222), H193 (= H224), R228 (= R260), E285 (= E352), Q308 (≠ A375), S315 (= S382), S317 (= S384)
- binding magnesium ion: A276 (≠ Q343), A279 (= A346), Q308 (≠ A375)
- binding 4-hydroxy-2-oxobutanoic acid: W93 (= W103), D108 (= D117), C191 (= C222), H193 (= H224), S315 (= S382), S317 (= S384), T347 (= T451), L348 (= L452)
1f8iA Crystal structure of isocitrate lyase:nitropropionate:glyoxylate complex from mycobacterium tuberculosis (see paper)
26% identity, 83% coverage: 67:506/531 of query aligns to 65:403/427 of 1f8iA
- active site: Y89 (= Y99), D108 (= D117), D153 (= D184), E155 (≠ D186), H180 (≠ Q211), E182 (= E213), S191 (≠ C222), H193 (= H224), R228 (= R260), E285 (= E352), Q308 (≠ A375), S315 (= S382), S317 (= S384)
- binding glyoxylic acid: Y89 (= Y99), S91 (= S101), W93 (= W103), D153 (= D184), T347 (= T451)
5e9fD Structural insights of isocitrate lyases from magnaporthe oryzae (see paper)
27% identity, 81% coverage: 75:506/531 of query aligns to 80:446/453 of 5e9fD
- active site: Y99 (= Y99), D118 (= D117), D172 (= D184), D174 (= D186), H199 (≠ Q211), E201 (= E213), R240 (= R260), E330 (= E352), Q353 (≠ A375), S360 (= S382), S362 (= S384)
- binding magnesium ion: D118 (= D117), D172 (= D184)
Query Sequence
>GFF1971 FitnessBrowser__psRCH2:GFF1971
MSAYQDDIKAVAALKEQYGSSWAAINPESVARMRAQNRFKTGLEIAQYTADIMRKDMAEY
DADSSVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYLSGWMVAALRSEFGPLPDQSM
HEKTAVSDLIEELYTFLRQADSRELDLLFTALDAAREAGDNAKAAEIQNQIDNYETHIVP
IIADIDAGFGNPEATYLLAKRMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHADFLAKI
AAVRYAFLELGIDNGVIVARTDSLGAGLTKQIAVTKEPGDLGDLYNSFLDCEEVSEAALG
NGDVVIKREGKLLRPKRLPSNLFQFRAGTGEARCILDCITSLQNGADLLWIETEKPHVGQ
IAAMVDEIRKTIPNAKLVYNNSPSFNWTLNFRQQVFDAFVAEGKDVSAYDRAKLMSVEYD
ETELAQVADEKIRTFQRDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADQGMLAYVK
GVQRQELRQGIACVKHQNMAGSDIGDNHKEYFAGEAALKASGKDNTMNQFH
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory