Comparing GFF1982 FitnessBrowser__Phaeo:GFF1982 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
27% identity, 16% coverage: 110:233/785 of query aligns to 38:161/427 of 8b01B
Sites not aligning to the query:
>GFF1982 FitnessBrowser__Phaeo:GFF1982
MLFGLDGVEIGLIIVFFCLFGGILSGFPVAFAIGGAGVISFGIIAALDSAGILVHQAIDT
SSQVYRDLVNSGVKPDSVSVFRYPDLPRVAEAVFPQGWEVAMDRNISFIVNRMNERVLAG
ASIETLLAVLMFVLMGITLERSKIANDLLTTMARVFGPLPGGLAVSIVVVGAFLAASTGI
VGATVVTMGLLALPTMLRNNYSPELATGVIAASGTLGQIIPPSIVIVLLGTLAGDLYSTA
QEARAQEFGCSDALTYLGEPAVVSVGTLFQAALLPGIMLALLYALYAFGYALLNPEKAPA
VVLEGGTGEPITRGEGLTWFLGVPVALIAGAMLLGQVNLIGSQNVNVSAFSDAGQTAALR
TNVGDQCKAAMIDLHGQEAWDAAVTEQDAIDAAGGVTQATKLTEEELEAAKIAKIDAAAP
IGTGLTVLMVLMGLVLAVGRGVSPSSDPKPLILGAIGVLLIALVDVVAIAPTTSPGITVL
LIALPTLLALYGCRIAAGRSARNDLIRVVFPPLILIVAVLGSILGGITNPTPAAALGAGG
AIMLAAYRKLQDQGKSGKIIIWATFAVAICILVGVNFDLRINGRSGVSAETVIAFGVAYG
AYLFALFGLLYGCWVLFKGGVLTPVVRETAKVTSMVFTILIGSQLLNLVVISFGGEHYIQ
QFLKSFDSELKVFLIVMVVLFILGFVLDFLEIIYIVIPIVGPVIYGGSFDPKWVTIMVAV
NLQTSFLTPPFGFALFYLRGVAPKEVTTAHIYRGVLPFVLIQVVGLGILWMFPSIVTIVP
ALMPN
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory