SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF1982 FitnessBrowser__Phaeo:GFF1982 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
27% identity, 16% coverage: 110:233/785 of query aligns to 38:161/427 of 8b01B

query
sites
8b01B
V
 
I
N
 
N
R
 
F
M
 
A
N
 
A
E
 
Q
R
 
Q
V
 
M
L
 
I
A
 
G
G
 
G
A
 
L
S
 
D
I
 
N
E
 
F
T
 
T
L
 
L
L
 
L
A
 
A
V
 
V
L
 
P
M
 
F
F
 
F
V
 
V
L
 
L
M
 
T
G
 
G
I
 
H
T
 
L
L
 
M
E
 
N
R
 
S
S
 
A
K
 
G
I
 
I
A
 
T
N
 
E
D
 
R
L
 
I
L
 
F
T
 
N
T
 
F
M
 
A
A
 
K
R
 
A
V
 
M
F
 
V
G
 
G
P
 
H
L
 
I
P
 
T
G
 
G
G
 
S
L
 
L
A
 
G
V
 
H
S
 
V
I
 
N
V
 
I
V
 
L
V
 
A
G
 
S
A
 
L
F
 
L
L
 
F
A
x
S
A
 
G
S
 
M
T
x
S
G
|
G
I
 
S
V
 
A
G
 
L
A
 
A
T
 
D
V
 
A
V
 
G
T
 
G
M
 
L
G
 
G
L
 
Q
L
 
L
A
 
E
L
 
I
P
 
K
T
 
S
M
 
M
L
 
R
R
 
D
N
 
A
N
 
K
Y
 
Y
S
 
D
P
 
D
E
 
D
L
 
F
A
 
A
T
 
G
G
 
G
V
 
L
I
 
T
A
 
A
A
 
A
S
 
S
G
 
C
T
 
I
L
 
I
G
|
G
Q
 
P
I
 
L
I
x
V
P
|
P
P
|
P
S
 
S
I
 
I
V
 
P
I
 
L
V
 
V
L
 
I
L
 
Y
G
 
G
T
 
V
L
 
V
A
 
S

Sites not aligning to the query:

Query Sequence

>GFF1982 FitnessBrowser__Phaeo:GFF1982
MLFGLDGVEIGLIIVFFCLFGGILSGFPVAFAIGGAGVISFGIIAALDSAGILVHQAIDT
SSQVYRDLVNSGVKPDSVSVFRYPDLPRVAEAVFPQGWEVAMDRNISFIVNRMNERVLAG
ASIETLLAVLMFVLMGITLERSKIANDLLTTMARVFGPLPGGLAVSIVVVGAFLAASTGI
VGATVVTMGLLALPTMLRNNYSPELATGVIAASGTLGQIIPPSIVIVLLGTLAGDLYSTA
QEARAQEFGCSDALTYLGEPAVVSVGTLFQAALLPGIMLALLYALYAFGYALLNPEKAPA
VVLEGGTGEPITRGEGLTWFLGVPVALIAGAMLLGQVNLIGSQNVNVSAFSDAGQTAALR
TNVGDQCKAAMIDLHGQEAWDAAVTEQDAIDAAGGVTQATKLTEEELEAAKIAKIDAAAP
IGTGLTVLMVLMGLVLAVGRGVSPSSDPKPLILGAIGVLLIALVDVVAIAPTTSPGITVL
LIALPTLLALYGCRIAAGRSARNDLIRVVFPPLILIVAVLGSILGGITNPTPAAALGAGG
AIMLAAYRKLQDQGKSGKIIIWATFAVAICILVGVNFDLRINGRSGVSAETVIAFGVAYG
AYLFALFGLLYGCWVLFKGGVLTPVVRETAKVTSMVFTILIGSQLLNLVVISFGGEHYIQ
QFLKSFDSELKVFLIVMVVLFILGFVLDFLEIIYIVIPIVGPVIYGGSFDPKWVTIMVAV
NLQTSFLTPPFGFALFYLRGVAPKEVTTAHIYRGVLPFVLIQVVGLGILWMFPSIVTIVP
ALMPN

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory