SitesBLAST
Comparing GFF2011 FitnessBrowser__psRCH2:GFF2011 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
Q9Z4J7 Quinoprotein ethanol dehydrogenase; QEDH; Quinoprotein alcohol dehydrogenase (cytochrome c); Quinoprotein alcohol dehydrogenase (cytochrome c550); EC 1.1.2.8 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 4 papers)
84% identity, 100% coverage: 1:623/623 of query aligns to 1:623/623 of Q9Z4J7
- 1:34 (vs. 1:34, 47% identical) signal peptide
- D45 (= D45) binding
- T48 (≠ S48) binding
- D51 (≠ N51) binding
- E95 (= E95) binding
- C139 (= C139) modified: Disulfide link with 140
- CC 139:140 (= CC 139:140) mutation to AA: 15-fold decrease in catalytic activity with the natural electron acceptor cytochrome c550. Does not affect, or even increases, catalytic activity with artificial electron acceptors. Shows high decreased affinity for primary alcohols, while the affinity for the secondary alcohol 2-propanol is unaltered.
- C140 (= C140) modified: Disulfide link with 139
- R145 (= R145) binding
- T189 (= T189) binding
- HGS 207:209 (= HGS 207:209) binding
- E213 (= E213) binding
- N300 (= N300) binding
- D350 (= D350) binding
- R378 (= R378) binding
- W523 (= W523) binding
- A587 (= A587) binding
1flgA Crystal structure of the quinoprotein ethanol dehydrogenase from pseudomonas aeruginosa (see paper)
86% identity, 93% coverage: 35:616/623 of query aligns to 1:582/582 of 1flgA
- active site: E179 (= E213), N266 (= N300), D316 (= D350)
- binding calcium ion: D11 (= D45), T14 (≠ S48), D17 (≠ N51), E179 (= E213), N266 (= N300), D316 (= D350)
- binding pyrroloquinoline quinone: E61 (= E95), C105 (= C139), C106 (= C140), R111 (= R145), T155 (= T189), S176 (= S210), G177 (= G211), D178 (= D212), W248 (= W282), R344 (= R378), N413 (= N447), W414 (= W448), W489 (= W523), G552 (= G586), A553 (= A587)
6zcvA Crystal structure of lanthanide-dependent alcohol dehydrogenase pedh from pseudomonas putida kt2440
55% identity, 93% coverage: 37:615/623 of query aligns to 2:558/562 of 6zcvA
- active site: E172 (= E213), N254 (= N300), D296 (= D350)
- binding calcium ion: N161 (≠ D197), K163 (= K199), P278 (= P332), D279 (≠ S333)
- binding pyrroloquinoline quinone: Q60 (≠ E95), C104 (= C139), C105 (= C140), I108 (≠ V143), R110 (= R145), S154 (≠ T189), G170 (= G211), G171 (≠ D212), E172 (= E213), W236 (= W282), D298 (≠ S352), R323 (= R378), N390 (= N447), W466 (= W523), G529 (= G586), A530 (= A587)
6damA Crystal structure of lanthanide-dependent methanol dehydrogenase xoxf from methylomicrobium buryatense 5g (see paper)
39% identity, 91% coverage: 50:614/623 of query aligns to 12:562/563 of 6damA
- active site: E171 (= E213), N259 (= N300), D301 (= D350)
- binding pyrroloquinoline quinone: E55 (= E95), C103 (= C139), C104 (= C140), R109 (= R145), T153 (= T189), S168 (= S210), G169 (= G211), G170 (≠ D212), E171 (= E213), T239 (≠ A280), W241 (= W282), D303 (≠ S352), R328 (= R378), N394 (= N447), W480 (= W523), G543 (= G586), W544 (= W591)
1kv9A Structure at 1.9 a resolution of a quinohemoprotein alcohol dehydrogenase from pseudomonas putida hk5 (see paper)
38% identity, 87% coverage: 53:594/623 of query aligns to 19:532/664 of 1kv9A
- active site: E173 (= E213), N250 (= N300), D295 (= D350)
- binding acetone: E173 (= E213), D295 (= D350)
- binding calcium ion: E173 (= E213), N250 (= N300), D295 (= D350)
- binding heme c: A101 (≠ D135), R102 (≠ I136)
- binding pyrroloquinoline quinone: E59 (= E95), C105 (= C139), C106 (= C140), R111 (= R145), T155 (= T189), G170 (≠ S210), A172 (≠ D212), E173 (= E213), T230 (≠ A280), W232 (= W282), K322 (≠ R378), N382 (= N447), W383 (= W448), W460 (≠ L522), V525 (≠ A587)
Sites not aligning to the query:
- binding heme c: 590, 591, 594, 595, 605, 606, 608, 611, 615, 619, 623, 631, 633, 636
Q8GR64 Quinohemoprotein alcohol dehydrogenase ADH IIB; ADH IIB; Alcohol dehydrogenase (azurin); EC 1.1.9.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
38% identity, 87% coverage: 53:594/623 of query aligns to 41:554/690 of Q8GR64
- E81 (= E95) binding
- C127 (= C139) modified: Disulfide link with 128
- C128 (= C140) modified: Disulfide link with 127
- R133 (= R145) binding
- T177 (= T189) binding
- GA 193:194 (≠ GD 211:212) binding
- E195 (= E213) binding
- T252 (≠ A280) binding
- N272 (= N300) binding
- D317 (= D350) binding
- K344 (≠ R378) binding
- NW 404:405 (= NW 447:448) binding
- V547 (≠ A587) binding
Sites not aligning to the query:
- 1:22 signal peptide
- 23:690 modified: mature protein, Quinohemoprotein alcohol dehydrogenase ADH IIB
- 613 binding covalent
- 616 binding covalent
- 617 binding axial binding residue
- 655 binding axial binding residue
Q4W6G0 Quinohemoprotein alcohol dehydrogenase ADH-IIG; ADH IIG; Alcohol dehydrogenase (azurin); EC 1.1.9.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 2 papers)
36% identity, 95% coverage: 11:604/623 of query aligns to 12:590/718 of Q4W6G0
- C138 (= C139) modified: Disulfide link with 139
- C139 (= C140) modified: Disulfide link with 138
- R144 (= R145) binding
- T189 (= T189) binding
- GA 205:206 (≠ GD 211:212) binding
- E207 (= E213) binding
- T264 (≠ A280) binding
- N284 (= N300) binding
- D329 (= D350) binding
- K356 (≠ R378) binding
- W415 (≠ L443) binding
- DW 419:420 (≠ NW 447:448) binding
Sites not aligning to the query:
- 1:29 signal peptide
- 30:718 modified: mature protein, Quinohemoprotein alcohol dehydrogenase ADH-IIG
- 635 binding covalent
- 638 binding covalent
- 639 binding axial binding residue
- 676 binding axial binding residue
1yiqA Molecular cloning and structural analysis of quinohemoprotein alcohol dehydrogenase adhiig from pseudomonas putida hk5. Compariison to the other quinohemoprotein alcohol dehydrogenase adhiib found in the same microorganism. (see paper)
36% identity, 89% coverage: 51:604/623 of query aligns to 21:561/684 of 1yiqA
- active site: E178 (= E213), N255 (= N300), D300 (= D350)
- binding calcium ion: E178 (= E213), N255 (= N300), D300 (= D350)
- binding pyrroloquinoline quinone: E63 (= E95), C109 (= C139), C110 (= C140), R115 (= R145), T160 (= T189), G175 (≠ S210), G176 (= G211), A177 (≠ D212), E178 (= E213), T235 (≠ A280), W237 (= W282), K327 (≠ R378), D390 (≠ N447), W391 (= W448), F477 (vs. gap), A542 (= A587)
Sites not aligning to the query:
- binding heme c: 605, 606, 608, 609, 610, 623, 626, 630, 634, 637, 638, 642, 645, 646, 647, 648, 650
Q46444 Quinohemoprotein alcohol dehydrogenase; QH-ADH; Alcohol dehydrogenase (azurin); PQQ-containing alcohol dehydrogenase; PQQ-dependent ADH; Quinohaemoprotein ethanol dehydrogenase type I; QH-EDHI; EC 1.1.9.1 from Comamonas testosteroni (Pseudomonas testosteroni) (see 3 papers)
37% identity, 85% coverage: 63:590/623 of query aligns to 71:578/708 of Q46444
- E101 (= E95) binding
- C147 (= C139) modified: Disulfide link with 148
- C148 (= C140) modified: Disulfide link with 147
- R153 (= R145) binding
- T198 (= T189) binding
- GA 214:215 (≠ GD 211:212) binding
- E216 (= E213) binding
- T274 (≠ A280) binding
- N294 (= N300) binding
- D339 (= D350) binding
- K366 (≠ R378) binding
- NW 425:426 (= NW 447:448) binding
- V575 (≠ A587) binding
Sites not aligning to the query:
- 1:31 signal peptide
- 635 binding covalent
- 638 binding covalent
- 639 binding axial binding residue
- 678 binding axial binding residue
1kb0A Crystal structure of quinohemoprotein alcohol dehydrogenase from comamonas testosteroni (see paper)
37% identity, 85% coverage: 63:590/623 of query aligns to 40:547/670 of 1kb0A
- active site: E185 (= E213), N263 (= N300), D308 (= D350)
- binding calcium ion: E185 (= E213), N263 (= N300), D308 (= D350)
- binding pyrroloquinoline quinone: E70 (= E95), C116 (= C139), C117 (= C140), R122 (= R145), T167 (= T189), G182 (≠ S210), G183 (= G211), A184 (≠ D212), E185 (= E213), T243 (≠ A280), W245 (= W282), D308 (= D350), K335 (≠ R378), N394 (= N447), W395 (= W448), W479 (≠ L522), G543 (= G586), V544 (≠ A587)
- binding tetrahydrofuran-2-carboxylic acid: C116 (= C139), C117 (= C140), E185 (= E213), D308 (= D350), P389 (= P441)
Sites not aligning to the query:
- binding heme c: 598, 599, 602, 603, 617, 620, 631, 637, 640, 642, 643, 645
7o6zB Structure of a neodymium-containing, xoxf1-type methanol dehydrogenase (see paper)
39% identity, 85% coverage: 63:590/623 of query aligns to 25:548/588 of 7o6zB
- binding methanol: E173 (= E213), W263 (= W304), D314 (= D350)
- binding Neodymium Ion: E173 (= E213), N259 (= N300), D314 (= D350), D316 (≠ S352)
- binding pyrroloquinoline quinone: E55 (= E95), C105 (= C139), C106 (= C140), R111 (= R145), T155 (= T189), G170 (≠ S210), G171 (= G211), D172 (= D212), E173 (= E213), W241 (= W282), D316 (≠ S352), R341 (= R378), D403 (≠ N447), W481 (= W523), G544 (= G586), W545 (≠ A587)
7o6zA Structure of a neodymium-containing, xoxf1-type methanol dehydrogenase (see paper)
39% identity, 85% coverage: 63:590/623 of query aligns to 25:548/588 of 7o6zA
O05542 Alcohol dehydrogenase (quinone), dehydrogenase subunit; ADH; Alcohol dehydrogenase (quinone), acceptor subunit; Alcohol dehydrogenase (quinone), subunit I; Ethanol:Q2 reductase; G3-ADH subunit I; Quinohemoprotein alcohol dehydrogenase; Quinohemoprotein-cytochrome c complex; Ubiquinol oxidase; EC 1.1.5.5 from Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans) (see paper)
36% identity, 87% coverage: 53:596/623 of query aligns to 55:597/757 of O05542
Sites not aligning to the query:
- 1:34 signal peptide
- 35 modified: Pyrrolidone carboxylic acid
8gy2A Cryo-em structure of membrane-bound alcohol dehydrogenase from gluconobacter oxydans
36% identity, 87% coverage: 53:596/623 of query aligns to 21:563/723 of 8gy2A
- binding calcium ion: E181 (= E213), N263 (= N300), D308 (= D350)
- binding heme c: D104 (vs. gap)
- binding pyrroloquinoline quinone: C107 (= C139), C108 (= C140), D163 (≠ T189), G179 (= G211), A180 (≠ D212), E181 (= E213), W245 (= W282), N263 (= N300), D308 (= D350), K335 (≠ R378), F398 (≠ W448), W489 (vs. gap)
Sites not aligning to the query:
- binding heme c: 618, 619, 622, 623, 633, 634, 636, 639, 652, 660, 662, 665
6fkwA Europium-containing methanol dehydrogenase (see paper)
38% identity, 84% coverage: 63:586/623 of query aligns to 25:531/576 of 6fkwA
- active site: E172 (= E213), N256 (= N300), D299 (= D350), D301 (≠ S352)
- binding europium ion: E172 (= E213), N256 (= N300), D299 (= D350), D301 (≠ S352)
- binding pyrroloquinoline quinone: E55 (= E95), C104 (= C139), C105 (= C140), R110 (= R145), T154 (= T189), S169 (= S210), G170 (= G211), G171 (≠ D212), E172 (= E213), T236 (≠ A280), W238 (= W282), D301 (≠ S352), R326 (= R378), D388 (≠ N447), W467 (= W523), G531 (= G586)
Sites not aligning to the query:
4maeA Methanol dehydrogenase from methylacidiphilum fumariolicum solv (see paper)
38% identity, 84% coverage: 63:586/623 of query aligns to 25:531/577 of 4maeA
- active site: E172 (= E213), N256 (= N300), D299 (= D350)
- binding cerium (iii) ion: E172 (= E213), N256 (= N300), D299 (= D350), D301 (≠ S352)
- binding pyrroloquinoline quinone: E55 (= E95), C104 (= C139), C105 (= C140), R110 (= R145), T154 (= T189), S169 (= S210), G170 (= G211), G171 (≠ D212), E172 (= E213), T236 (≠ A280), W238 (= W282), D301 (≠ S352), R326 (= R378), D388 (≠ N447), W467 (= W523), G531 (= G586)
Sites not aligning to the query:
P16027 Methanol dehydrogenase [cytochrome c] subunit 1; MDH large subunit alpha; MEDH; EC 1.1.2.7 from Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1) (Methylobacterium extorquens) (see 3 papers)
36% identity, 91% coverage: 43:612/623 of query aligns to 27:590/626 of P16027
- C130 (= C139) modified: Disulfide link with 131; mutation to S: Inactive.
- C131 (= C140) modified: Disulfide link with 130; mutation to S: Inactive.
- D330 (= D350) mutation to E: Lower affinity for methanol.
- C413 (≠ S439) modified: Disulfide link with 442
- C442 (≠ K468) modified: Disulfide link with 413
Sites not aligning to the query:
1w6sC The high resolution structure of methanol dehydrogenase from methylobacterium extorquens (see paper)
36% identity, 91% coverage: 48:612/623 of query aligns to 10:563/596 of 1w6sC
- active site: E177 (= E213), N261 (= N300), D303 (= D350)
- binding calcium ion: E177 (= E213), N261 (= N300)
- binding pyrroloquinoline quinone: E55 (= E95), C103 (= C139), C104 (= C140), R109 (= R145), T159 (= T189), S174 (= S210), A176 (≠ D212), E177 (= E213), T241 (≠ A280), W243 (= W282), R331 (= R378), N394 (= N447), W476 (= W523), W540 (= W591)
7ce5A Methanol-pqq bound methanol dehydrogenase (mdh) from methylococcus capsulatus (bath) (see paper)
36% identity, 85% coverage: 60:586/623 of query aligns to 22:532/573 of 7ce5A
- active site: E177 (= E213), N261 (= N300), D303 (= D350)
- binding calcium ion: E177 (= E213), N261 (= N300), D303 (= D350)
- binding methanol: E177 (= E213)
- binding pyrroloquinoline quinone: E55 (= E95), C103 (= C139), C104 (= C140), R109 (= R145), T159 (= T189), A174 (≠ S210), G175 (= G211), A176 (≠ D212), E177 (= E213), T241 (≠ A280), W243 (= W282), R330 (= R378), N393 (= N447), W469 (= W523), G532 (= G586)
Sites not aligning to the query:
7cdlC Holo-methanol dehydrogenase (mdh) with cys131-cys132 reduced from methylococcus capsulatus (bath) (see paper)
36% identity, 85% coverage: 60:586/623 of query aligns to 22:532/573 of 7cdlC
- active site: E177 (= E213), N261 (= N300), D303 (= D350)
- binding calcium ion: E177 (= E213), N261 (= N300), D303 (= D350)
- binding pyrroloquinoline quinone: E55 (= E95), R109 (= R145), T159 (= T189), A174 (≠ S210), A176 (≠ D212), E177 (= E213), T241 (≠ A280), W243 (= W282), D303 (= D350), R330 (= R378), N393 (= N447), W469 (= W523), G532 (= G586)
Sites not aligning to the query:
Query Sequence
>GFF2011 FitnessBrowser__psRCH2:GFF2011
MTTRSNPGSKRPLAIAVHYLALAGSLALAGAAHAKPVSWEDIANDHLSTANVLQYGMGTN
AQRWSPLAQVNESNVFKLTPAWSFSFGDEKQRGQESQAIVHDGVIYVTGSYSRVFALDAK
TGKRLWSYAHRLPDDIRPCCDVVNRGAAIYGDKIYFGTLDARVVALNKDTGKVVWNKKFG
DHAAGYTMTGAPTLVKDGKTGKVLLVHGSSGDEFGIVGKLFARDPETGEEVWMRPFVEGH
MGRLNGKDSTPTGDIKAPSWPDDPNHPTGKKEAWSQGGGAPWQSASFDPETNTIIVGAGN
PAPWNGWERTSDGGNPKDYDSLYTSGQVGVDPSTGEVKWFYQHTPNDAWDFSGNNELVLF
DYKDNNGKTVKATAHADRNGFFYVVDRKDGKLQNAFPFVDGITWASHIDLKTGRPVENQG
QRPPKPEPGEKHGKSVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYKK
GSAYLGQGFRIKRMYDDHVGILRAMNPTTGKIEWEHKEKLPLWAGVLATKGNLIFTGTSD
GYFKAFNAKTGDELWKFQTGSGVISPPVTWEQDGEQYIGVTVGYGGAVPLWGGDMAVLTK
PVAQGGSFWVFKLPEWEKKTAKR
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory