Comparing GFF2021 Psest_2064 ABC-type uncharacterized transport system, duplicated ATPase component to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
39% identity, 47% coverage: 10:269/553 of query aligns to 3:266/330 of P0AAH4
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
39% identity, 46% coverage: 278:533/553 of query aligns to 2:248/253 of 7z15I
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
39% identity, 46% coverage: 278:533/553 of query aligns to 2:248/250 of 7z18I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
39% identity, 46% coverage: 278:533/553 of query aligns to 2:248/250 of 7z16I
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
37% identity, 46% coverage: 10:264/553 of query aligns to 4:257/326 of Q8RDH4
Sites not aligning to the query:
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
37% identity, 46% coverage: 10:264/553 of query aligns to 3:256/310 of 4fwiB
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
34% identity, 45% coverage: 303:551/553 of query aligns to 18:263/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
34% identity, 45% coverage: 303:551/553 of query aligns to 19:264/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
34% identity, 45% coverage: 303:551/553 of query aligns to 19:264/344 of 3tuiC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
34% identity, 45% coverage: 303:551/553 of query aligns to 19:264/344 of 6cvlD
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
39% identity, 42% coverage: 29:263/553 of query aligns to 18:239/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
39% identity, 42% coverage: 29:263/553 of query aligns to 18:239/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
39% identity, 42% coverage: 29:263/553 of query aligns to 18:239/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
39% identity, 42% coverage: 29:263/553 of query aligns to 18:239/242 of 2oljA
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
37% identity, 42% coverage: 29:262/553 of query aligns to 17:236/241 of 4u00A
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
31% identity, 42% coverage: 298:529/553 of query aligns to 9:236/240 of 4ymuJ
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
31% identity, 44% coverage: 292:532/553 of query aligns to 29:266/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
31% identity, 44% coverage: 292:532/553 of query aligns to 29:266/382 of 7aheC
Sites not aligning to the query:
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
32% identity, 42% coverage: 10:240/553 of query aligns to 1:223/232 of 1f3oA
7mdyC Lolcde nucleotide-bound
35% identity, 42% coverage: 10:243/553 of query aligns to 2:223/226 of 7mdyC
>GFF2021 Psest_2064 ABC-type uncharacterized transport system, duplicated ATPase component
MAEQPIAENLVEVRDLAVEFVTGEQVQRVVEGVTFDIRKGETLALVGESGSGKSVTAHSI
LRLLPYPLARHPQGQILFHGQDLLKADEKAMRKIRGNRIAMVFQEPMTSLNPLHTVGKQI
NEVLEIHKGLRGKAATARTLELLELVGIPEPRKRIRAYPHELSGGQRQRVVIAMALANEP
ELLIADEPTTALDVTVQLKILELLKELQARLGMALLLISHDLNLVRRIAHRVCVMQRGRV
VEQALCEDLFRAPQHPYTQELLAAEPSGGPVAVEEAPPLLEVDDLRVWFPIKKGLLRRTV
DHIKAVDGVNFSLPKGQTLGIVGESGSGKSTLGLAILRLLGSRGEIRFQGQHLQSMSQRQ
VRPLRRQMQVVFQDPFGSLSPRMSVGQIVGEGLHIHRMGNAKEQEQAIIEALVEVGLDPE
TRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQAKYNL
TYLFISHDLAVVRALSHQMMVVKQGQVVEQGAAADIFAAPQHPYTQQLLESAFMAPGTAE
QPEEGQAHGFSHR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory