Comparing GFF2070 FitnessBrowser__WCS417:GFF2070 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 11 hits to proteins with known functional sites (download)
Q9Y7Q9 Probable metabolite transporter C2H8.02 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
26% identity, 43% coverage: 3:237/541 of query aligns to 21:260/583 of Q9Y7Q9
Sites not aligning to the query:
P36035 Carboxylic acid transporter protein homolog from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
30% identity, 28% coverage: 76:227/541 of query aligns to 187:325/616 of P36035
Sites not aligning to the query:
Q09852 Putative inorganic phosphate transporter C23D3.12 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
27% identity, 31% coverage: 15:184/541 of query aligns to 37:211/559 of Q09852
Sites not aligning to the query:
O42885 Putative inorganic phosphate transporter C8E4.01c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
24% identity, 41% coverage: 15:236/541 of query aligns to 39:277/572 of O42885
Sites not aligning to the query:
Q8NLB7 Gentisate transporter from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see paper)
23% identity, 38% coverage: 33:240/541 of query aligns to 52:244/444 of Q8NLB7
Sites not aligning to the query:
Q12300 High glucose sensor RGT2; Low-affinity glucose receptor RGT2; Low-affinity transporter-like sensor RGT2; Restores glucose transport protein 2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
27% identity, 45% coverage: 79:322/541 of query aligns to 158:426/763 of Q12300
Sites not aligning to the query:
8fvzA Pipt y150a
24% identity, 56% coverage: 23:326/541 of query aligns to 4:311/433 of 8fvzA
Sites not aligning to the query:
A0A0H2VG78 Glucose transporter GlcP; Glucose/H(+) symporter from Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) (see paper)
29% identity, 30% coverage: 85:246/541 of query aligns to 63:209/446 of A0A0H2VG78
Sites not aligning to the query:
Q9Z2I6 Synaptic vesicle glycoprotein 2C; Synaptic vesicle protein 2C from Rattus norvegicus (Rat) (see 3 papers)
25% identity, 27% coverage: 80:225/541 of query aligns to 204:347/727 of Q9Z2I6
Sites not aligning to the query:
Q496J9 Synaptic vesicle glycoprotein 2C from Homo sapiens (Human) (see 4 papers)
25% identity, 27% coverage: 80:225/541 of query aligns to 204:347/727 of Q496J9
Sites not aligning to the query:
P25297 Inorganic phosphate transporter PHO84 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
22% identity, 57% coverage: 23:330/541 of query aligns to 64:433/587 of P25297
Sites not aligning to the query:
>GFF2070 FitnessBrowser__WCS417:GFF2070
MSEQAQPLGAAVNTAITRNESKKVIFASSLGTVFEWYDFFLYGALAAVISKQFFAGVNDT
TAFIFALMAFAAGFVVRPFGALVFGRLGDMIGRKYTFLVTIILMGVATFCVGLLPTYASI
GIAAPIILIVLRMLQGLALGGEYGGAATYVAEHAPAGKRGFHTSWIQSTATLGLLLSLLV
VLACRYFTGDQFEVWGWRIPFLFSIVLLGISTWIRMSLHESPAFLKMKEEGKASKSPIRD
SFGKWENLKIVLIALFSINGGQAVTFYAAQFYVLFFLTQFLKMDPALANMLLIISVVIGA
PFFIFFGWLSDKVGRKPVLMLGLLLATALYFPIFKSLAHYTNPAMDQASNQAPITVLADP
ATCTFQFDPVGKAKFDSPCDKVKTFLVKQGLPYSSAAAPAGSPVQVSVGDVRIEGFDEKA
LRGAVTLAGYPSSADVAQVNKTMVVVLIVALILIAAMCYGPLAALMVELFPTRIRYTSMS
LPYHIGNGWFGGFLPTVSFALVVYTGDIFYGLWYPVVVTGVSLIVGMICLKETRHVDIDK
N
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory