SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing GFF2105 FitnessBrowser__psRCH2:GFF2105 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

3ijrF 2.05 angstrom resolution crystal structure of a short chain dehydrogenase from bacillus anthracis str. 'Ames ancestor' in complex with NAD+
60% identity, 98% coverage: 7:285/285 of query aligns to 11:290/290 of 3ijrF

query
sites
3ijrF

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active site: G57 (= G52), S182 (= S177), L192 (= L187), Y195 (= Y190), K199 (= K194), K240 (≠ D235)
binding magnesium ion: D55 (= D50), S56 (= S51), E80 (≠ Q75)
binding nicotinamide-adenine-dinucleotide: P21 (= P16), D55 (= D50), S56 (= S51), G57 (= G52), I58 (= I53), Y77 (= Y72), L78 (= L73), E80 (≠ Q75), G103 (= G98), D104 (= D99), L105 (≠ V100), N131 (= N126), V132 (≠ A127), A133 (= A128), Q134 (≠ E129), I155 (≠ T150), T180 (= T175), S182 (= S177), Y195 (= Y190), K199 (= K194), P225 (= P220), G226 (= G221), P227 (= P222), I228 (= I223), T230 (= T225), L232 (= L227)

3i3oA 2.06 angstrom resolution crystal structure of a short chain dehydrogenase from bacillus anthracis str. 'Ames ancestor' in complex with NAD-acetone
60% identity, 98% coverage: 7:285/285 of query aligns to 3:282/282 of 3i3oA

query
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3i3oA

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active site: G49 (= G52), S174 (= S177), L184 (= L187), Y187 (= Y190), K191 (= K194), K232 (≠ D235)
binding magnesium ion: D47 (= D50), S48 (= S51), E72 (≠ Q75)
binding nicotinamide adenine dinucleotide acetone adduct: G45 (= G48), D47 (= D50), S48 (= S51), G49 (= G52), I50 (= I53), Y69 (= Y72), L70 (= L73), E72 (≠ Q75), G95 (= G98), D96 (= D99), L97 (≠ V100), N123 (= N126), V124 (≠ A127), A125 (= A128), Q126 (≠ E129), Q127 (= Q130), I147 (≠ T150), T172 (= T175), S174 (= S177), Y187 (= Y190), K191 (= K194), P217 (= P220), G218 (= G221), I220 (= I223), T222 (= T225), L224 (= L227)

5jydB Crystal structure of a putative short chain dehydrogenase from burkholderia cenocepacia
49% identity, 96% coverage: 8:280/285 of query aligns to 14:288/292 of 5jydB

query
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5jydB

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active site: G58 (= G52), S184 (= S177), L194 (= L187), Y197 (= Y190), K201 (= K194), P242 (≠ D235)
binding magnesium ion: D56 (= D50), S57 (= S51), E82 (≠ Q75)
binding nicotinamide-adenine-dinucleotide: G54 (= G48), D56 (= D50), S57 (= S51), G58 (= G52), I59 (= I53), L79 (= L73), E82 (≠ Q75), D106 (= D99), I107 (≠ V100), N133 (= N126), A134 (= A127), A135 (= A128), T182 (= T175), S184 (= S177), Y197 (= Y190), K201 (= K194), P227 (= P220), G228 (= G221), P229 (= P222), Y230 (≠ I223), T232 (= T225), L234 (= L227), Q235 (≠ I228)

P0AG84 Uncharacterized oxidoreductase YghA; EC 1.-.-.- from Escherichia coli (strain K12) (see paper)
47% identity, 95% coverage: 9:280/285 of query aligns to 17:290/294 of P0AG84

query
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P0AG84

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K39 (≠ E31) modified: N6-acetyllysine

3r3sA Structure of the ygha oxidoreductase from salmonella enterica
47% identity, 95% coverage: 9:280/285 of query aligns to 15:288/292 of 3r3sA

query
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3r3sA

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E

K

G

D

K

R

T

K

A

A

I

L

I

V

T

T

G

G

D
|
D

S
|
S

G
|
G

I
|
I

G

G

R

R

S

A

V

A

A

A

V

I

L

A

F

Y

A

A

R

R

E

E

G

G

A

A

D

D

V

V

A

A

I

I

L

N

Y

Y

L
|
L

D

P

-

A

Q
x
E

H

E

Q

E

D

D

A

A

E

Q

T

V

R

K

T

A

V

L

V

I

E

E

Q

E

Y

C

G

G

R

R

R

K

C

A

L

V

T

L

F

L

A

P

G

G

D
|
D

V
x
L

A

S

D

D

R

E

D

S

V

F

C

A

R

R

K

S

V

L

I

V

D

H

E

K

T

A

L

R

A

E

A

A

F

L

G

G

K

G

L

L

D

D

I

I

L

L

V

A

N

L

N
x
V

A
|
A

A
x
G

E

K

Q

Q

H

T

P

A

Q

I

E

P

K

E

L

I

E

K

D

D

I

L

S

T

E

S

E

E

Q

Q

W

F

E

Q

K

Q

T

T

F

F

R

A

T

V

N

N

I

V

F

F

G

A

M

L

F

F

Q

W

M

I

T

T

K

Q

A

E

V

A

L

I

P

P

H

L

L

L

G

P

K

K

G

G

A

A

S

S

I

I

N

T

T

T

T

S

S
|
S

V

I

T

Q

A

A

Y

Y

K

Q

G

P

S

S

P

P

Q

H

L
|
L

L

L

D

D

Y
|
Y

S

A

A

A

T

T

K
|
K

G

A

A

A

I

I

T

L

A

N

F

Y

T

S

R

R

S

G

L

L

S

A

M

K

N

Q

L

V

A

A

E

E

R

K

G

G

I

I

R

R

V

V

N

N

G

I

V

V

A

A

P
|
P

G
|
G

P

P

I
|
I

W

W

T
|
T

P

A

L
|
L

-
x
Q

I

I

S

S

S

G

T

G

F

Q

D

T

A
x
Q

D

D

E

K

V

I

A

P

E

Q

F

F

G

G

S

Q

N

Q

T

T

P

P

M

M

K

K

R

R

P

A

G

G

Q

Q

P

P

D

A

E

E

V

L

A

A

P

P

A

V

Y

Y

V

V

Y

Y

L

L

A

A

S

S

S

Q

D

E

A

S

Y

Y

V

V

S

T

G

A

Q

E

V

V

I

H

H

G

V

V

N

C

G

G

active site: G58 (= G52), S184 (= S177), L194 (= L187), Y197 (= Y190), K201 (= K194), Q242 (≠ A234)
binding magnesium ion: D56 (= D50), S57 (= S51), E82 (≠ Q75)
binding nicotinamide-adenine-dinucleotide: D56 (= D50), S57 (= S51), G58 (= G52), I59 (= I53), L79 (= L73), E82 (≠ Q75), D106 (= D99), L107 (≠ V100), V133 (≠ N126), A134 (= A127), G135 (≠ A128), S184 (= S177), Y197 (= Y190), K201 (= K194), P227 (= P220), G228 (= G221), I230 (= I223), T232 (= T225), L234 (= L227), Q235 (vs. gap)

7v0hG Crystal structure of putative glucose 1-dehydrogenase from burkholderia cenocepacia in complex with NADP and a potential reaction product
38% identity, 85% coverage: 38:280/285 of query aligns to 8:251/253 of 7v0hG

query
sites
7v0hG

K

K

L

L

E

A

G

G

K

K

T

V

A

A

I

I

I

V

T

T

G
|
G

G

A

D
x
S

S
x
K

G
|
G

I
|
I

G

G

R

A

S

A

V

I

A

A

V

K

L

A

F

L

A

A

R

D

E

E

G

G

A

A

D

A

V

V

A

V

I

V

L

N

Y

Y

L
x
A

D
x
S

Q
x
S

H

K

Q

A

D

G

A

A

E

D

E

A

T

V

R

V

T

S

V

A

V

I

E

T

Q

E

Y

A

G

G

R

G

R

R

C

A

L

V

T

A

F

V

A

G

G
|
G

D
|
D

V
|
V

A

S

D

K

R

A

D

A

V

D

C

A

R

Q

K

R

V

I

I

V

D

D

E

T

T

A

L

I

A

E

A

T

F

Y

G

G

K

R

L

L

D

D

I

V

L

L

V

V

N

N

N
|
N

A
x
S

A
x
G

E

-

Q

V

H
x
Y

P

E

Q

F

E

A

K

P

L

I

E

E

D

A

I

I

S

T

E

E

Q

H

W

Y

E

R

K

R

T

Q

F

F

R

D

T

T

N

N

I

V

F

F

G

G

M

V

F

L

Q

L

M

T

T

T

K

Q

A

A

V

A

L

V

P

K

H

H

L

L

G

G

K

E

G

G

A

A

S

S

I

I

N

N

T
x
I

T

S

S
|
S

V

V

T

V

A

T

Y

S

K

I

G

T

S

P

P

P

Q

A

L

S

L

A

D

V

Y
|
Y

S

S

A

G

T

T

K
|
K

G

G

A

A

I

V

T

D

A

A

F

I

T

T

R

G

S

V

L

L

S

A

M

L

N

E

L

L

A

G

E

P

R

R

G

K

I

I

R

R

V

V

N

N

G

A

V

I

A

N

P
|
P

G
|
G

P
x
M

I
|
I

W

V

T
|
T

P

E

L
x
G

I
x
T

S

H

S

S

T

A

-

G

-
x
I

F

I

D

G

A

S

D

D

E

L

V

E

A

A

E

Q

F

V

G

L

S

G

N

Q

T

T

P

P

M

L

K

G

R

R

P

L

G

G

Q

E

P

P

D

N

E

D

V

I

A

A

P

S

A

V

Y

A

V

V

Y

F

L

L

A

A

S

S

S

D

D

D

A

A

A

R

Y

W

V

M

S

T

G

G

Q

E

V

H

I

L

H

V

V

V

N

S

G

G

binding nadp nicotinamide-adenine-dinucleotide phosphate: G18 (= G48), S20 (≠ D50), K21 (≠ S51), G22 (= G52), I23 (= I53), A43 (≠ L73), S44 (≠ D74), S45 (≠ Q75), G68 (= G98), D69 (= D99), V70 (= V100), N96 (= N126), S97 (≠ A127), G98 (≠ A128), Y100 (≠ H131), I144 (≠ T175), S146 (= S177), Y159 (= Y190), K163 (= K194), P189 (= P220), G190 (= G221), M191 (≠ P222), I192 (= I223), T194 (= T225), G196 (≠ L227), T197 (≠ I228)
binding (2R)-2-(hydroxymethyl)pentanedioic acid: S146 (= S177), Y159 (= Y190), M191 (≠ P222), I202 (vs. gap)

5ojiA Crystal structure of the dehydrogenase/reductase sdr family member 4 (dhrs4) from caenorhabditis elegans (see paper)
37% identity, 86% coverage: 38:281/285 of query aligns to 7:256/260 of 5ojiA

query
sites
5ojiA

K

R

L

F

E

E

G

G

K

K

T

V

A

A

I

I

I

V

T

T

G
x
A

G

A

D
x
T

S

K

G
|
G

I
|
I

G

G

R

L

S

A

V

I

A

A

V

E

L

R

F

L

A

L

R

D

E

E

G

G

A

A

D

S

V

V

A

V

I

I

L

G

Y
x
S

L
x
R

D
x
N

Q

Q

H

K

Q
x
N

D

V

A

D

E

E

E

A

T

I

R

E

T

Y

V

L

V

K

E

N

Q

K

Y

G

G

L

R

T

R

K

C

V

L

A

T

G

F

I

A

A

G

G

D

H

V
x
I

A

A

D

S

R

T

D

D

V

D

C

Q

R

K

K

K

V

L

I

V

D

D

E

F

T

T

L

L

A

Q

A

K

F

F

G

G

K

K

L

I

D

N

I

I

L

L

V

V

N

N

N
|
N

A
x
H

A
x
G

E

I

Q

N

H

P

P

A

Q

F

E

G

K

H

L

I

E

L

D

E

I

V

S

S

E

D

E

Q

Q

V

W

W

E

D

K

K

T

L

F

F

R

E

T

V

N

N

I

V

F

K

G

A

M

G

F

F

Q

Q

M

M

T

T

K

K

A

L

V

V

L

H

P

P

H

H

L

I

G

A

K

K

-

E

-

G

G

G

A

G

S

A

I

I

N

F

T
x
N

T

A

S
|
S

V

Y

T
x
S

A

A

Y

Y

K

K

G

S

S

P

P

P

Q

G

L

I

L

A

D

A

Y
|
Y

S

G

A

V

T

T

K
|
K

G

T

A

T

I

L

T

V

A

G

F

L

T

T

R

R

S

A

L

L

S

A

M

M

N

G

L

L

A

A

E

K

R

D

G

N

I

I

R

R

V

V

N

N

G

G

V

I

A

A

P

P

G
|
G

P
x
V

I
|
I

W

K

T
|
T

P

K

L
x
M

I
x
S

S

Q

S

V

T
x
L

F

W

D

D

A

G

D

G

E

E

V

D

A

A

E

E

F

K

G

E

-

L

-

T

-

D

-

I

S

Q

N

E

T

I

P

A

M

L

K

G

R

R

P

L

G

G

Q

V

P

P

D

D

E

D

V

C

A

A

P

G

A

T

Y

V

V

A

Y

Y

L

L

A

A

S

S

S

D

D

D

A

S

Y

Y

V

I

S

T

G

G

Q

E

V

M

I

I

H

I

V

I

N

A

G

G

T

V

active site: G21 (= G52), S148 (= S177), Y161 (= Y190), K165 (= K194)
binding isatin: S148 (= S177), S150 (≠ T179), Y161 (= Y190), V193 (≠ P222), S199 (≠ I228), L202 (≠ T231)
binding nadp nicotinamide-adenine-dinucleotide phosphate: A17 (≠ G48), T19 (≠ D50), I22 (= I53), S41 (≠ Y72), R42 (≠ L73), N43 (≠ D74), N46 (≠ Q77), I69 (≠ V100), N95 (= N126), H96 (≠ A127), G97 (≠ A128), N146 (≠ T175), S148 (= S177), Y161 (= Y190), K165 (= K194), G192 (= G221), I194 (= I223), T196 (= T225), M198 (≠ L227)

5ojgA Crystal structure of the dehydrogenase/reductase sdr family member 4 (dhrs4) from caenorhabditis elegans (see paper)
37% identity, 86% coverage: 38:281/285 of query aligns to 7:256/260 of 5ojgA

query
sites
5ojgA

K

R

L

F

E

E

G

G

K

K

T

V

A

A

I

I

I

V

T

T

G
x
A

G

A

D
x
T

S

K

G
|
G

I
|
I

G

G

R

L

S

A

V

I

A

A

V

E

L

R

F

L

A

L

R

D

E

E

G

G

A

A

D

S

V

V

A

V

I

I

L

G

Y
x
S

L
x
R

D
x
N

Q

Q

H

K

Q
x
N

D

V

A

D

E

E

E

A

T

I

R

E

T

Y

V

L

V

K

E

N

Q

K

Y

G

G

L

R

T

R

K

C

V

L

A

T

G

F

I

A

A

G

G

D

H

V
x
I

A

A

D

S

R

T

D

D

V

D

C

Q

R

K

K

K

V

L

I

V

D

D

E

F

T

T

L

L

A

Q

A

K

F

F

G

G

K

K

L

I

D

N

I

I

L

L

V

V

N

N

N
|
N

A
x
H

A
x
G

E

I

Q

N

H

P

P

A

Q

F

E

G

K

H

L

I

E

L

D

E

I

V

S

S

E

D

E

Q

Q

V

W

W

E

D

K

K

T

L

F

F

R

E

T

V

N

N

I

V

F

K

G

A

M

G

F

F

Q

Q

M

M

T

T

K

K

A

L

V

V

L

H

P

P

H

H

L

I

G

A

K

K

-

E

-

G

G

G

A

G

S

A

I

I

N

F

T
x
N

T

A

S
|
S

V

Y

T

S

A

A

Y

Y

K

K

G

S

S

P

P

P

Q

G

L

I

L

A

D

A

Y
|
Y

S

G

A

V

T

T

K
|
K

G

T

A

T

I

L

T

V

A

G

F

L

T

T

R

R

S

A

L

L

S

A

M

M

N

G

L

L

A

A

E

K

R

D

G

N

I

I

R

R

V

V

N

N

G

G

V

I

A

A

P
|
P

G

G

P

V

I
|
I

W

K

T
|
T

P

K

L
x
M

I

S

S

Q

S

V

T

L

F

W

D

D

A

G

D

G

E

E

V

D

A

A

E

E

F

K

G

E

-

L

-

T

-

D

-

I

S

Q

N

E

T

I

P

A

M

L

K

G

R

R

P

L

G

G

Q

V

P

P

D

D

E

D

V

C

A

A

P

G

A

T

Y

V

V

A

Y

Y

L

L

A

A

S

S

S

D

D

D

A

S

Y

Y

V

I

S

T

G

G

Q

E

V

M

I

I

H

I

V

I

N

A

G

G

T

V

active site: G21 (= G52), S148 (= S177), Y161 (= Y190), K165 (= K194)
binding butane-2,3-dione: S148 (= S177), Y161 (= Y190)
binding nadp nicotinamide-adenine-dinucleotide phosphate: A17 (≠ G48), T19 (≠ D50), G21 (= G52), I22 (= I53), S41 (≠ Y72), R42 (≠ L73), N43 (≠ D74), N46 (≠ Q77), I69 (≠ V100), N95 (= N126), H96 (≠ A127), G97 (≠ A128), N146 (≠ T175), S148 (= S177), Y161 (= Y190), K165 (= K194), P191 (= P220), I194 (= I223), T196 (= T225), M198 (≠ L227)

3osuA Crystal structure of the 3-oxoacyl-acyl carrier protein reductase, fabg, from staphylococcus aureus
36% identity, 84% coverage: 42:280/285 of query aligns to 5:243/246 of 3osuA

query
sites
3osuA

K

K

T

S

A

A

I

L

I

V

T

T

G

G

G

A

D

S

S

R

G
|
G

I

I

G

G

R

R

S

S

V

I

A

A

V

L

L

Q

F

L

A

A

R

E

E

E

G

G

A

Y

D

N

V

V

A

A

I

V

L

N

Y

Y

L

A

D

G

Q

S

H

K

Q

E

D

K

A

A

E

E

E

A

T

V

R

V

T

E

V

E

V

I

E

K

Q

A

Y

K

G

G

R

V

R

D

C

S

L

F

T

A

F

I

A

Q

G

A

D

N

V

V

A

A

D

D

R

A

D

D

V

E

C

V

R

K

K

A

V

M

I

I

D

K

E

E

T

V

L

V

A

S

A

Q

F

F

G

G

K

S

L

L

D

D

I

V

L

L

V

V

N

N

N
|
N

A

A

A

G

E

I

Q

T

H

R

P

D

Q

N

E

-

K

L

L

L

E

M

D

R

I

M

S

K

E

E

E

Q

Q

E

W

W

E

D

K

D

T

V

F

I

R

D

T

T

N

N

I

L

F

K

G

G

M

V

F

F

Q

N

M

C

T

I

K

Q

A

K

V

A

L

T

P

P

H

Q

L

M

-

L

-

R

G

Q

K

R

G

S

A

G

S

A

I

I

N

N

T

L

T

S

S
|
S

V

V

T

V

A

G

Y

A

K

V

G

G

S

N

P

P

Q

G

L
x
Q

L

A

D

N

Y
|
Y

S

V

A

A

T

T

K
|
K

G

A

A

G

I

V

T

I

A

G

F

L

T

T

R

K

S

S

L

A

S

A

M

R

N

E

L

L

A

A

E

S

R

R

G

G

I

I

R

T

V

V

N

N

G

A

V

V

A

A

P

P

G

G

P

F

I

I

W

V

T

S

P

D

L

M

I

T

S

D

S

A

T

L

F

-

D

-

A

S

D

D

E

E

V

L

A

K

E

E

-

Q

F

M

G

L

S

T

N

Q

T

I

P

P

M

L

K

A

R

R

P

F

G

G

Q

Q

P

D

D

T

E

D

V

I

A

A

P

N

A

T

Y

V

V

A

Y

F

L

L

A

A

S

S

S

D

D

K

A

A

A

K

Y

Y

V

I

S

T

G

G

Q

Q

V

T

I

I

H

H

V

V

N

N

G

G

active site: G15 (= G52), S141 (= S177), Q151 (≠ L187), Y154 (= Y190), K158 (= K194)
binding magnesium ion: N89 (= N126), K158 (= K194)

3sj7A Structure of beta-ketoacetyl-coa reductase (fabg) from staphylococcus aureus complex with NADPH (see paper)
36% identity, 84% coverage: 42:280/285 of query aligns to 2:236/239 of 3sj7A

query
sites
3sj7A

K

K

T

S

A

A

I

L

I

V

T

T

G
|
G

G

A

D
x
S

S
x
R

G
|
G

I
|
I

G

G

R

R

S

S

V

I

A

A

V

L

L

Q

F

L

A

A

R

E

E

E

G

G

A

Y

D

N

V

V

A

A

I

V

L
x
N

Y
|
Y

L
x
A

D
x
G

Q
x
S

H

K

Q

E

D

K

A

A

E

E

E

A

T

V

R

V

T

E

V

E

V

I

E

K

Q

A

Y

K

G

G

R

V

R

D

C

S

L

F

T

A

F

I

A

Q

G
x
A

D
x
N

V
|
V

A

A

D

D

R

A

D

D

V

E

C

V

R

K

K

A

V

M

I

I

D

K

E

E

T

V

L

V

A

S

A

Q

F

F

G

G

K

S

L

L

D

D

I

V

L

L

V

V

N

N

N
|
N

A
|
A

A

G

E

I

Q

T

H

R

P

D

Q

N

E

-

K

L

L

L

E

M

D

R

I

M

S

K

E

E

E

Q

Q

E

W

W

E

D

K

D

T

V

F

I

R

D

T
|
T

N

N

I

L

F

K

G

G

M

V

F

F

Q

N

M

C

T

I

K

Q

A

K

V

A

L

T

P

P

H

Q

L

M

-

L

-

R

G

Q

K

R

G

S

A

G

S

A

I

I

N

N

T

L

T

S

S
|
S

V

V

T

V

A

G

Y

A

K

V

G

G

S

N

P

P

Q

G

L
x
Q

L

A

D

N

Y
|
Y

S

V

A

A

T

T

K
|
K

G

A

A

G

I

V

T

I

A

G

F

L

T

T

R

K

S

S

L

A

S

A

M

R

N

E

L

L

A

A

E

S

R

R

G

G

I

I

R

T

V

V

N

N

G

A

V

V

A

A

P
|
P

G
|
G

P

F

I

I

W

V

T

S

P

D

L

M

I

-

S

-

T

-

F

-

D

-

A

T

D

D

E

E

V

L

A

K

E

E

-

Q

F

M

G

L

S

T

N

Q

T

I

P

P

M

L

K

A

R

R

P

F

G

G

Q

Q

P

D

D

T

E

D

V

I

A

A

P

N

A

T

Y

V

V

A

Y

F

L

L

A

A

S

S

S

D

D

K

A

A

A

K

Y

Y

V

I

S

T

G

G

Q

Q

V

T

I

I

H

H

V

V

N

N

G

G

active site: G12 (= G52), S138 (= S177), Q148 (≠ L187), Y151 (= Y190), K155 (= K194)
binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: G8 (= G48), S10 (≠ D50), R11 (≠ S51), I13 (= I53), N31 (≠ L71), Y32 (= Y72), A33 (≠ L73), G34 (≠ D74), S35 (≠ Q75), A58 (≠ G98), N59 (≠ D99), V60 (= V100), N86 (= N126), A87 (= A127), T109 (= T150), S138 (= S177), Y151 (= Y190), K155 (= K194), P181 (= P220), G182 (= G221)

8bcjB Crystal structure of short-chain dehydrogenase pa3128 from pseudomonas aeruginosa pao1 in complex with NADP+
37% identity, 83% coverage: 45:280/285 of query aligns to 8:249/250 of 8bcjB

query
sites
8bcjB

I

L

I

I

T

T

G
|
G

G

A

D
x
S

S
x
R

G
|
G

I
|
I

G

G

R

A

S

A

V

T

A

A

V

L

L

L

F

A

A

A

R

E

E

R

G

G

A

Y

D

A

V

V

A

V

I

L

L

N

Y

Y

L
|
L

D
x
R

Q
x
N

H

R

Q

E

D

A

A

A

E

E

E

A

T

L

R

R

T

Q

V

R

V

I

E

E

Q

R

Y

Q

G

G

R

G

R

E

C

A

L

L

T

A

F

V

A

A

G
x
A

D
|
D

V
|
V

A

A

D

E

R

E

D

G

V

D

C

V

R

E

K

R

V

L

I

F

D

A

E

S

T

I

L

D

A

E

A

R

F

F

G

G

K

R

L

L

D

D

I

V

L

L

V

V

N

N

N
|
N

A
|
A

A
x
G

E

M

Q

L

H

E

P

A

Q

Q

E

T

K

R

L

L

E

E

D

N

I

I

S

D

E

A

Q

R

W

L

E

H

K

R

T

V

F

F

R

A

T
|
T

N

N

I

V

F

T

G

G

M

S

F

F

Q

L

M

C

T

A

K

R

A

E

V

A

L

V

P

K

-

R

-

L

-

S

-

T

-

R

H

H

L

G

G

G

K

R

G

G

A

G

S

S

I

I

I

V

N

N

T
x
V

T

S

S
|
S

V

M

T

A

A

S

Y

R

K

L

G

G

S

S

P

P

-

N

Q

E

L

Y

L

I

D

D

Y
|
Y

S

A

A

A

T

A

K
|
K

G

G

A

A

I

I

T

D

A

S

F

M

T

T

R

I

S

G

L

L

S

A

M

R

N

E

L

V

A

A

E

A

R

E

G

G

I

I

R

R

V

V

N

N

G

A

V

V

A

R

P
|
P

G
|
G

P

L

I
|
I

W

D

T
|
T

P

E

L
x
I

I
x
H

S

A

S

S

T

G

F

G

D

E

A

P

D

G

E

R

V

I

A

E

E

R

F

L

G

K

S

G

N

G

T

I

P

P

M

L

K

G

R

R

P

G

G

G

Q

T

P

A

D

E

E

E

V

V

A

A

P

R

A

A

Y

I

V

L

Y

W

L

L

A

A

S

S

S

D

D

E

A

A

A

S

Y

Y

V

S

S

T

G

G

Q

T

V

F

I

I

H

D

V

V

N

S

G

G

binding nadp nicotinamide-adenine-dinucleotide phosphate: G11 (= G48), S13 (≠ D50), R14 (≠ S51), G15 (= G52), I16 (= I53), L36 (= L73), R37 (≠ D74), N38 (≠ Q75), A61 (≠ G98), D62 (= D99), V63 (= V100), N89 (= N126), A90 (= A127), G91 (≠ A128), T113 (= T150), V143 (≠ T175), S145 (= S177), Y159 (= Y190), K163 (= K194), P189 (= P220), G190 (= G221), I192 (= I223), T194 (= T225), I196 (≠ L227), H197 (≠ I228)

4nbuB Crystal structure of fabg from bacillus sp (see paper)
35% identity, 86% coverage: 38:283/285 of query aligns to 4:244/244 of 4nbuB

query
sites
4nbuB

K

R

L

L

E

Q

G

D

K

K

T

V

A

A

I

I

T

T

G
|
G

G

A

D

A

S
x
N

G
|
G

I
|
I

G

G

R

L

S

E

V

A

A

A

V

R

L

V

F

F

A

M

R

K

E

E

G

G

A

A

D

K

V

V

A

V

I

I

L

A

Y
x
D

L
x
F

D

N

Q

E

H

A

Q

A

D

G

A

K

E

E

E

A

T

V

R

-

T

-

V

-

E

-

Q

E

Y

A

G

N

R

P

R

G

C

V

L

V

T

F

F

I

A

R

G
x
V

D
|
D

V
|
V

A

S

D

D

R

R

D

E

V

S

C

V

R

H

K

R

V

L

I

V

D

E

E

N

T

V

L

A

A

E

A

R

F

F

G

G

K

K

L

I

D

D

I

I

L

L

V

I

N

N

N
|
N

A
|
A

A
x
G

E
x
I

Q

T

H

R

P

-

Q
x
D

E

S

K

M

L

L

E

S

D
x
K

I

M

S

T

E

V

E

D

Q

Q

W

F

E

Q

K

Q

T

V

F

I

R

N

T

V

N
|
N

I

L

F

T

G

G

M

V

F

F

Q

H

M

C

T

T

K

Q

A

A

V

V

L

L

P

P

H

Y

L

M

-

A

-

E

-

Q

G

G

K

K

G

G

A

-

S

K

I

I

N

N

T
|
T

T

S

S
|
S

V

V

T

T

A

G

Y

T

K

Y

G

G

S
x
N

P
x
V

Q

G

L
x
Q

L

T

D

N

Y
|
Y

S

A

A

A

T

A

K
|
K

G

A

A

G

I

V

T

I

A

G

F

M

T

T

R

K

S

T

L

W

S

A

M

K

N

E

L

L

A

A

E

R

R

K

G

G

I

I

R

N

V

V

N

N

G

A

V

V

A

A

P
|
P

G

G

P
x
F

I
x
T

W

E

T
|
T

P

A

L
x
M

I

V

S

A

S

E

T

V

F

P

D

E

A

-

D

K

E

V

V

I

A

E

E
x
K

F

M

G

K

S

A

N

Q

T

V

P

P

M

M

K

G

R

R

P

L

G

G

Q

K

P

P

D

E

E

D

V

I

A

A

P

N

A

A

Y

Y

V

L

Y

F

L

L

A

A

S

S

S

H

D

E

A

S

A

D

Y

Y

V

V

S

N

G

G

Q

H

V

V

I

L

H

H

V

V

N

D

G

G

T

I

V

M

active site: G18 (= G52), N111 (= N151), S139 (= S177), Q149 (≠ L187), Y152 (= Y190), K156 (= K194)
binding acetoacetyl-coenzyme a: D93 (≠ Q133), K98 (≠ D138), S139 (= S177), N146 (≠ S184), V147 (≠ P185), Q149 (≠ L187), Y152 (= Y190), F184 (≠ P222), M189 (≠ L227), K200 (≠ E239)
binding 1,4-dihydronicotinamide adenine dinucleotide: G14 (= G48), N17 (≠ S51), G18 (= G52), I19 (= I53), D38 (≠ Y72), F39 (≠ L73), V59 (≠ G98), D60 (= D99), V61 (= V100), N87 (= N126), A88 (= A127), G89 (≠ A128), I90 (≠ E129), T137 (= T175), S139 (= S177), Y152 (= Y190), K156 (= K194), P182 (= P220), F184 (≠ P222), T185 (≠ I223), T187 (= T225), M189 (≠ L227)

3ay6B Crystal structure of bacillus megaterium glucose dehydrogenase 4 a258f mutant in complex with nadh and d-glucose (see paper)
33% identity, 85% coverage: 39:280/285 of query aligns to 11:255/267 of 3ay6B

query
sites
3ay6B

L

L

E

K

G

D

K

K

T

V

A

V

I

V

I

I

T

T

G
|
G

G

G

D

S

S
x
T

G
|
G

I
x
L

G

G

R

R

S

A

V

M

A

A

V

V

L

R

F

F

A

G

R

Q

E

E

G

E

A

A

D

K

V

V

A

V

I

I

L

N

Y

Y

L
x
Y

D

N

Q

N

H

E

Q

E

D

E

A

A

E

L

E

D

T

A

R

K

T

K

V

E

V

V

E

E

Q

E

Y

A

G

G

R

G

R

Q

C

A

L

I

T

I

F

V

A

Q

G

G

D
|
D

V
|
V

A

T

D

K

R

E

D

E

V

D

C

V

R

V

K

N

V

L

I

V

D

Q

E

T

T

A

L

I

A

K

A

E

F

F

G

G

K

T

L

L

D

D

I

V

L

M

V

I

N

N

N
|
N

A
|
A

A
x
G

E
x
V

Q
x
E

H

N

P

P

Q

V

E

P

K

S

L

H

E

E

D

-

I

L

S

S

E

L

E

D

Q

N

W

W

E

N

K

K

T

V

F

I

R

D

T

T

N

N

I

L

F

T

G

G

M

A

F

F

Q

L

M

G

T

S

K

R

A

E

V

A

L

I

P

K

H

Y

L

F

G

V

K

E

G

N

-

D

-

I

-

K

A

G

S

N

I

V

I

I

N

N

T
x
M

T

S

S
|
S

V

V

T
x
H

A

E

Y

M

K

I

G

P

S
x
W

P

P

Q

L

L

F

L

V

D

H

Y
|
Y

S

A

A

A

T

S

K
|
K

G

G

A

G

I

M

T

K

A

L

F

M

T

T

R

E

S

T

L

L

S

A

M

L

N

E

L

Y

A

A

E

P

R

K

G

G

I

I

R

R

V

V

N

N

G

N

V

I

A

G

P
|
P

G
|
G

P

A

I
x
M

W

N

T
|
T

P
|
P

L
x
I

I
x
N

S

A

S

E

T
x
K

F

F

-

A

D

D

A

P

D

V

E

Q

V

R

A

A

E

D

F

V

G

E

S

S

N

M

T

I

P

P

M

M

K

G

R

Y

P

I

G

G

Q

K

P

P

D

E

E

E

V

V

A

A

P

A

A

V

Y

A

V

A

Y

F

L

L

A

A

S

S

D

Q

A

A

A

S

Y

Y

V

V

S

T

G

G

Q

I

V

T

I

L

H

F

V

A

N

D

G

G

active site: G24 (= G52), S151 (= S177), Y164 (= Y190), K168 (= K194)
binding beta-D-glucopyranose: E102 (≠ Q130), S151 (= S177), H153 (≠ T179), W158 (≠ S184), Y164 (= Y190), N202 (≠ I228), K205 (≠ T231)
binding 1,4-dihydronicotinamide adenine dinucleotide: G20 (= G48), T23 (≠ S51), G24 (= G52), L25 (≠ I53), Y45 (≠ L73), D71 (= D99), V72 (= V100), N98 (= N126), A99 (= A127), G100 (≠ A128), V101 (≠ E129), M149 (≠ T175), S151 (= S177), Y164 (= Y190), K168 (= K194), P194 (= P220), G195 (= G221), M197 (≠ I223), T199 (= T225), P200 (= P226), I201 (≠ L227), N202 (≠ I228)

P40288 Glucose 1-dehydrogenase; EC 1.1.1.47 from Priestia megaterium (Bacillus megaterium) (see 2 papers)
33% identity, 85% coverage: 39:280/285 of query aligns to 5:249/261 of P40288

query
sites
P40288

L

L

E

E

G

G

K

K

T

V

A

V

I
x
V

I
|
I

T
|
T

G
|
G

G
x
S

D
x
S

S
x
T

G
|
G

I
x
L

G
|
G

R
x
K

S
|
S

V
x
M

A
|
A

V
x
I

L
x
R

F
|
F

A
|
A

R
x
T

E
|
E

G
x
K

A
|
A

D
x
K

V
|
V

A
x
V

I

V

L

N

Y

Y

L

R

D

S

Q

K

H

E

Q

D

D

E

A

A

E

N

E

S

T

V

R

L

T

E

V

E

V

I

E

K

Q

K

Y

V

G

G

R

G

R

E

C

A

L

I

T

A

F

V

A

K

G

G

D

D

V

V

A

T

D

V

R

E

D

S

V

D

C

V

R

I

K

N

V

L

I

V

D

Q

E

S

T

A

L

I

A

K

A

E

F

F

G

G

K

K

L

L

D

D

I

V

L

M

V

I

N

N

A

A

A

G

E

L

Q
x
E

H

N

P

P

Q

V

E

S

K

S

L

H

E

E

D

-

I

M

S

S

E

L

E

S

Q
x
D

W

W

E

N

K

K

T
x
V

F

I

R

D

T

T

N

N

I

L

F

T

G

G

M

A

F

F

Q

L

M

G

T

S

K

R

A

E

V

A

L

I

P

K

H

Y

L

F

G

V

K
x
E

G

N

-

D

-

I

-

K

A

G

S

T

I

V

I

I

N

N

T

M

T

S

S

S

V

V

T

H

A

E

Y

K

K

I

G

P

S

W

P

P

Q

L

L

F

L

V

D

H

Y

Y

S

A

A

A

T

S

K

K

G

G

A

G

I

M

T

K

A

L

F

M

T

T

R

E

S

T

L

L

S

A

M

L

N

E

L

Y

A

A

E

P

R

K

G

G

I

I

R

R

V
|
V

N

N

G

N

V

I

A

G

P

P

G

G

P

A

I

I

W

N

T

T

P
|
P

L

I

I

N

S

A

S

E

T

K

F

F

-

A

D

D

A

P

D

E

E

Q

V

R

A

A

E

D

F

V

G
x
E

S

S

N

M

T

I

P

P

M

M

K

G

R
x
Y

P

I

G

G

Q

E

P

P

D

E

E

E

V

I

A

A

P

A

A

V

Y

A

V

A

Y

W

L

L

A

A

S

S

D

E

A

A

A

S

Y

Y

V

V

S

T

G

G

Q

I

V

T

I

L

H

F

V

A

N

D

G

G

11:35 (vs. 45:69, 48% identical) binding
E96 (≠ Q130) mutation E->A,G,K: Heat stable.
D108 (≠ Q143) mutation to N: Heat stable.
V112 (≠ T147) mutation to A: Heat stable.
E133 (≠ K168) mutation to K: Heat stable.
V183 (= V215) mutation to I: Heat stable.
P194 (= P226) mutation to Q: Heat stable.
E210 (≠ G241) mutation to K: Heat stable.
Y217 (≠ R248) mutation to H: Heat stable.

Sites not aligning to the query:

252 Q→L: Heat stable.
253 Y→C: Heat stable.
258 A→G: Heat stable.

1g6kA Crystal structure of glucose dehydrogenase mutant e96a complexed with NAD+
33% identity, 85% coverage: 39:280/285 of query aligns to 5:249/261 of 1g6kA

query
sites
1g6kA

L

L

E

E

G

G

K

K

T

V

A

V

I

V

I

I

T

T

G

G

G

S

D

S

S
x
T

G
|
G

I
x
L

G

G

R

K

S

S

V

M

A

A

V

I

L

R

F

F

A

A

R

T

E

E

G

K

A

A

D

K

V

V

A

V

I

V

L

N

Y

Y

L
x
R

D

S

Q

K

H

E

Q

D

D

E

A

A

E

N

E

S

T

V

R

L

T

E

V

E

V

I

E

K

Q

K

Y

V

G

G

R

G

R

E

C

A

L

I

T

A

F

V

A

K

G

G

D
|
D

V
|
V

A

T

D

V

R

E

D

S

V

D

C

V

R

I

K

N

V

L

I

V

D

Q

E

S

T

A

L

I

A

K

A

E

F

F

G

G

K

K

L

L

D

D

I

V

L

M

V

I

N

N

N
|
N

A
|
A

A
x
G

E

L

Q

A

H

N

P

P

Q

V

E

S

K

S

L

H

E

E

D

-

I

M

S

S

E

L

E

S

Q

D

W

W

E

N

K

K

T

V

F

I

R

D

T

T

N

N

I

L

F

T

G

G

M

A

F

F

Q

L

M

G

T

S

K

R

A

E

V

A

L

I

P

K

H

Y

L

F

G

V

K

E

G

N

-

D

-

I

-

K

A

G

S

T

I

V

I

I

N

N

T
x
M

T

S

S
|
S

V

V

T

H

A

E

Y

K

K

I

G

P

S

W

P

P

Q

L

L

F

L

V

D

H

Y
|
Y

S

A

A

A

T

S

K
|
K

G

G

A

G

I

M

T

K

A

L

F

M

T

T

R

E

S

T

L

L

S

A

M

L

N

E

L

Y

A

A

E

P

R

K

G

G

I

I

R

R

V

V

N

N

G

N

V

I

A

G

P
|
P

G
|
G

P

A

I
|
I

W

N

T
|
T

P

P

L

I

I

N

S

A

S

E

T

K

F

F

-

A

D

D

A

P

D

E

E

Q

V

R

A

A

E

D

F

V

G

E

S

S

N

M

T

I

P

P

M

M

K

G

R

Y

P

I

G

G

Q

E

P

P

D

E

E

E

V

I

A

A

P

A

A

V

Y

A

V

A

Y

W

L

L

A

A

S

S

D

E

A

A

A

S

Y

Y

V

V

S

T

G

G

Q

I

V

T

I

L

H

F

V

A

N

D

G

G

active site: G18 (= G52), S145 (= S177), Y158 (= Y190), K162 (= K194)
binding nicotinamide-adenine-dinucleotide: T17 (≠ S51), G18 (= G52), L19 (≠ I53), R39 (≠ L73), D65 (= D99), V66 (= V100), N92 (= N126), A93 (= A127), G94 (≠ A128), M143 (≠ T175), S145 (= S177), Y158 (= Y190), P188 (= P220), G189 (= G221), I191 (= I223), T193 (= T225)

Q9KJF1 (2S)-[(R)-hydroxy(phenyl)methyl]succinyl-CoA dehydrogenase subunit BbsD; (S,R)-2-(alpha-hydroxybenzyl)succinyl-CoA dehydrogenase subunit BbsD; EC 1.1.1.429 from Thauera aromatica (see 2 papers)
35% identity, 85% coverage: 39:280/285 of query aligns to 3:242/248 of Q9KJF1

query
sites
Q9KJF1

L

I

E

Q

G

N

K

R

T

V

A

A

I

L

I

I

T

T

G

G

G

S

D

A

S
|
S

G

G

I

M

G

G

R

K

S

Q

V

T

A

A

V

L

L

R

F

F

A

A

R

E

E

Q

G

G

A

A

D

A

V

V

A

V

I

I

L

-

Y

-

L

-

D

-

Q

N

H
x
D

Q

I

D

D

A

A

E

E

E

K

T

V

R

R

T

A

V

T

V

V

E

D

Q

E

Y

F

-

S

-

A

-

R

G

G

R

H

R

R

C

V

L

L

T

G

F

A

A

V

G

A

D
|
D

V
x
I

A

G

D

N

R

K

D

A

V

A

C

V

R

D

K

G

V

M

I

V

D

K

E

Q

T

T

L

I

A

D

A

A

F

F

G

G

K

R

L

I

D

D

I

I

L

L

V

V

N

N

N
|
N

A

A

A

G

E

M

Q

E

H

R

P

A

Q

G

E

-

K

A

L

L

E

R

D

K

I

L

S

S

E

E

E

A

Q

D

W

W

E

D

K

V

T

T

F

I

R

N

T

V

N

N

I

L

F

K

G

G

M

T

F

F

Q

L

M

C

T

T

K

Q

A

A

V

V

L

H

P

G

H

H

L

M

-

V

-

E

G

N

K

K

G

H

A

G

S

R

I

I

I

V

N

N

T

I

T

A

S

S

V

-

T

R

A

A

Y

W

K

L

G

G

S

G

P

A

Q

G

L

Q

L

T

D

P

Y
|
Y

S

S

A

S

T

A

K
|
K

G

A

A

G

I

V

T

V

A

G

F

M

T

T

R

R

S

A

L

L

S

A

M

I

N

E

L

L

A

G

E

R

R

A

G

G

I

I

R

T

V

V

N

N

G

C

V

V

A

A

P

P

G

G

P

L

I

I

W

H

T

T

P

P

L

M

I

W

S

D

S

E

T

L

F

P

D

E

A

K

D

D

E

Q

V

Q

A

F

E

L

F

L

G

-

S

S

N

R

T

Q

P

P

M

T

K

G

R

K

P

L

G

G

Q

E

P

P

D

D

E

D

V

I

A

A

P

N

A

T

Y

L

V

L

Y

F

L

L

A

A

S

D

D

D

A

S

A

G

Y

F

V

V

S

T

G

G

Q

Q

V

V

I

L

H

Y

V

V

N

C

G

G

S15 (= S51) binding
D36 (≠ H76) binding
D62 (= D99) binding
I63 (≠ V100) binding
N89 (= N126) binding
Y153 (= Y190) binding
K157 (= K194) binding

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

7pcsB Structure of the heterotetrameric sdr family member bbscd (see paper)
35% identity, 85% coverage: 39:280/285 of query aligns to 2:241/247 of 7pcsB

query
sites
7pcsB

L

I

E

Q

G

N

K

R

T

V

A

A

I

L

I

I

T

T

G
|
G

G

S

D

A

S

S

G

G

I
x
M

G

G

R

K

S

Q

V

T

A

A

V

L

L

R

F

F

A

A

R

E

E

Q

G

G

A

A

D

A

V

V

A

V

I

I

L

-

Y

-

L

-

D

-

Q

N

H
x
D

Q
x
I

D

D

A

A

E

E

E

K

T

V

R

R

T

A

V

T

V

V

E

D

Q

E

Y

F

-

S

-

A

-

R

G

G

R

H

R

R

C

V

L

L

T

G

F

A

A

V

G

A

D

D

V
x
I

A

G

D

N

R

K

D

A

V

A

C

V

R

D

K

G

V

M

I

V

D

K

E

Q

T

T

L

I

A

D

A

A

F

F

G

G

K

R

L

I

D

D

I

I

L

L

V

V

N

N

N
|
N

A

A

A
x
G

E

M

Q

E

H

R

P

A

Q

G

E

-

K

A

L

L

E

R

D

K

I

L

S

S

E

E

E

A

Q

D

W

W

E

D

K

V

T

T

F

I

R

N

T

V

N

N

I

L

F

K

G

G

M

T

F

F

Q

L

M

C

T

T

K

Q

A

A

V

V

L

H

P

G

H

H

L

M

-

V

-

E

G

N

K

K

G

H

A

G

S

R

I

I

I

V

N

N

T
x
I

T

A

S
|
S

V

-

T

R

A

A

Y

W

K

L

G

G

S

G

P

A

Q

G

L

Q

L

T

D

P

Y
|
Y

S

S

A

S

T

A

K
|
K

G

A

A

G

I

V

T

V

A

G

F

M

T

T

R

R

S

A

L

L

S

A

M

I

N

E

L

L

A

G

E

R

R

A

G

G

I

I

R

T

V

V

N

N

G

C

V

V

A

A

P

P

G

G

P

L

I
|
I

W

H

T

T

P

P

L

M

I

W

S

D

S

E

T

L

F

P

D

E

A

K

D

D

E

Q

V

Q

A

F

E

L

F

L

G

-

S

S

N

R

T

Q

P

P

M

T

K

G

R

K

P

L

G

G

Q

E

P

P

D

D

E

D

V

I

A

A

P

N

A

T

Y

L

V

L

Y

F

L

L

A

A

S

D

D

D

A

S

A

G

Y

F

V

V

S

T

G

G

Q

Q

V

V

I

L

H

Y

V

V

N

C

G

G

binding nicotinamide-adenine-dinucleotide: G11 (= G48), M16 (≠ I53), D35 (≠ H76), I36 (≠ Q77), I62 (≠ V100), N88 (= N126), G90 (≠ A128), I138 (≠ T175), S140 (= S177), Y152 (= Y190), K156 (= K194), I185 (= I223)

5t5qC Crystal structure of short-chain dehydrogenase/reductase sdr:glucose/ribitol dehydrogenase from brucella melitensis
35% identity, 85% coverage: 38:280/285 of query aligns to 4:241/245 of 5t5qC

query
sites
5t5qC

K

E

L

F

E

E

G

N

K

R

T

T

A

L

I

V

I

L

T

T

G

G

G

A

D
x
N

S
x
G

G
|
G

I
|
I

G

G

R

R

S

A

V

I

A

A

V

E

L

L

F

F

A

H

R

A

E

S

G

G

A

A

D

N

V

L

A

V

I

L

L

T

Y
x
D

L
|
L

D

D

Q

R

H

-

Q

-

D

-

A

-

E

E

E

G

T

L

R

D

T

A

V

F

V

A

E

A

Q

S

Y

L

G

G

-

S

-

P

R

E

R

R

C

I

L

A

T

T

F

I

A

K

G

A

D
|
D

V
x
A

A

S

D

S

R

A

D

D

V

D

C

A

R

E

K

K

V

T

I

V

D

A

E

L

T

A

L

M

A

E

A

R

F

F

G

G

K

G

L

I

D

D

I

F

L

L

V

V

N

P

N
x
S

A

A

A

G

E

-

Q

I

H

Y

P

Q

Q

A

E

K

K

P

L

F

E

A

D

E

I

M

S

S

E

D

E

A

Q

D

W

W

E

H

K

R

T

T

F

I

R

S

T
x
I

N

N

I

L

F

D

G

G

M

V

F

F

Q

Y

M

L

T

C

K

K

A

R

V

A

L

L

P

P

H

A

L

L

G

K

K

E

G

D

A

S

S

S

I

I

I

V

N

T

T

L

T

A

S
|
S

V

L

T

A

A

A

Y

Y

K

R

G

G

S

A

P

Y

Q

V

L
x
N

L

A

D

H

Y
|
Y

S

G

A

A

T

T

K
|
K

G

G

A

A

I

M

T

V

A

S

F

M

T

T

R

R

S

A

L

L

S

S

M

R

N

E

L

L

A

A

E

P

R

K

G

-

I

T

R

R

V

V

N

N

G

G

V

V

A

S

P
|
P

G

G

P

I

I
|
I

W

E

T
|
T

P

P

L
x
M

I

T

S

S

S

E

T

L

F

L

D

K

A

T

D

-

E

R

V

M

A

D

E

E

F

T

G

M

S

T

N

Q

T

T

P

P

M

L

K

K

R

R

P

L

G

G

Q

K

P

P

D

S

E

E

V

I

A

A

P

S

A

V

Y

I

V

A

Y

F

L

L

A

C

S

S

S

P

D

A

A

A

A

S

Y

F

V

V

S

T

G

G

Q

E

V

T

I

I

H

Q

V

V

N

N

G

G

active site: G18 (= G52), S140 (= S177), N150 (≠ L187), Y153 (= Y190), K157 (= K194)
binding nicotinamide-adenine-dinucleotide: N16 (≠ D50), G17 (≠ S51), G18 (= G52), I19 (= I53), D38 (≠ Y72), L39 (= L73), D63 (= D99), A64 (≠ V100), S90 (≠ N126), I113 (≠ T150), Y153 (= Y190), K157 (= K194), P182 (= P220), I185 (= I223), T187 (= T225), M189 (≠ L227)

4iqgD Crystal structure of bpro0239 oxidoreductase from polaromonas sp. Js666 in NADP bound form
36% identity, 84% coverage: 42:280/285 of query aligns to 3:247/248 of 4iqgD

query
sites
4iqgD

K

K

T

V

A

V

I

L

I

I

T

T

G
|
G

G

G

D
x
S

S
x
R

G
|
G

I
|
I

G

G

R

A

S

A

V

S

A

A

V

L

L

L

F

A

A

A

R

R

E

Q

G

G

A

Y

D

A

V

V

A

A

I

V

L
x
N

Y

Y

L
x
A

D
x
S

Q
x
N

H

S

Q

A

D

A

A

A

E

D

E

E

T

V

R

V

T

R

V

Q

V

I

E

R

Q

E

Y

A

G

G

R

G

R

Q

C

A

L

L

T

A

F

V

A

Q

G
x
A

D
|
D

V
|
V

A

A

D

K

R

E

D

R

V

E

C

V

R

L

K

A

V

M

I

F

D

E

E

T

T

V

L

D

A

A

A

Q

F

L

G

G

K

R

L

L

D

S

I

A

L

L

V

V

N

N

N
|
N

A
|
A

A
x
G

E

V

Q

V

H

D

P

Q

Q

T

E

T

K

R

L

V

E

D

D

G

I

I

S

T

E

L

E

E

Q

R

W

L

E

Q

K

R

T

M

F

F

R

E

T

I

N
|
N

I

V

F

F

G

G

M

S

F

F

Q

L

M

C

T

A

K

R

A

E

V

A

L

V

P

K

H

R

L

M

-

S

-

T

-

R

-

Y

-

G

G

G

K

S

G

G

A

G

S

S

I

I

I

V

N

N

T
x
V

T

S

S
|
S

V

A

T

A

A

A

Y

R

K

L

G

G

S

S

P

P

-

G

Q

Q

L
x
Y

L

V

D

D

Y
|
Y

S

A

A

A

T

A

K
|
K

G

G

A

A

I

I

T

D

A

T

F

F

T

T

R

L

S

G

L

L

S

A

M

K

N

E

L

V

A

A

E

T

R

E

G

G

I

I

R

R

V

V

N

N

G

A

V

V

A

R

P
|
P

G
|
G

P

I

I
|
I

W

E

T
|
T

P

D

L
x
I

I
x
H

S

A

S

S

T

G

F

G

D

L

A

P

D

N

E

R

V

A

A

R

E

D

F

V

G

A

S

P

N

Q

T

V

P

P

M

M

K

Q

R

R

P

A

G

G

Q

T

P

A

D

R

E

E

V

V

A

A

P

E

A

A

Y

I

V

V

Y

W

L

L

A

L

S

G

S

D

D

Q

A

A

A

S

Y

Y

V

T

S

T

G

G

Q

A

V

L

I

L

H

D

V

V

N

T

G

G

active site: G13 (= G52), N112 (= N151), S143 (= S177), Y154 (≠ L187), Y157 (= Y190), K161 (= K194)
binding nadp nicotinamide-adenine-dinucleotide phosphate: G9 (= G48), S11 (≠ D50), R12 (≠ S51), G13 (= G52), I14 (= I53), N32 (≠ L71), A34 (≠ L73), S35 (≠ D74), N36 (≠ Q75), A59 (≠ G98), D60 (= D99), V61 (= V100), N87 (= N126), A88 (= A127), G89 (≠ A128), V141 (≠ T175), S143 (= S177), Y157 (= Y190), K161 (= K194), P187 (= P220), G188 (= G221), I190 (= I223), T192 (= T225), I194 (≠ L227), H195 (≠ I228)

4bmsF Short chain alcohol dehydrogenase from ralstonia sp. Dsm 6428 in complex with NADPH
37% identity, 85% coverage: 38:280/285 of query aligns to 3:245/249 of 4bmsF

query
sites
4bmsF

K

R

L

L

E

L

G

N

K

K

T

T

A

A

I

V

I

I

T

T

G
|
G

G

G

D
x
N

S
|
S

G

G

I
|
I

G

G

R

L

S

A

V

T

A

A

V

K

L

R

F

F

A

V

R

A

E

E

G

G

A

A

D

Y

V

V

A

F

I

I

L

V

Y

-

L

-

D

-

Q

-

H

G

Q
x
R

D
x
R

A

R

E

K

E

E

T

L

R

E

T

Q

V

A

E

A

Q

E

Y

I

G

G

R

R

R

N

C

V

L

T

T

A

F

V

A

K

G
x
A

D
|
D

V
|
V

A

T

-

K

-

L

-

E

D

D

R

L

D

D

V

R

C

L

R

Y

K

A

V

I

I

V

D

R

E

E

T

Q

L

R

A

-

F

-

G

G

K

S

L

I

D

D

I

V

L

L

V

F

N

A

N
|
N

A
x
S

A
x
G

E

A

Q

I

H

E

P

-

Q

Q

E

K

K

T

L

L

E

E

D

E

I

I

S

T

E

P

E

E

Q

H

W

Y

E

D

K

R

T

T

F

F

R

D

T
x
V

N

N

I

V

F

R

G

G

M

L

F

I

Q

F

M

T

T

V

K

Q

A

K

V

A

L

L

P

P

H

L

L

L

G

R

K

D

G

G

A

G

S

S

I

V

I

I

N

L

T

T

T

S

S
|
S

V

V

T

A

A

G

Y

V

K

L

G

G

S

L

P

Q

Q

A

L
x
H

L

D

D

T

Y
|
Y

S

S

A

A

T

A

K
|
K

G

A

A

A

I

V

T

R

A

S

F

L

T

A

R

R

S

T

L

W

S

T

M

T

N

E

L

L

A

K

E

G

R

R

G

S

I

I

R

R

V

V

N

N

G

A

V

V

A

S

P

P

G
|
G

P

A

I
|
I

W

D

T
|
T

P

P

L
x
I

I

I

-

E

-

N

-

Q

-

V

S

S

S

T

T
x
Q

F

E

D

E

A

A

D

D

E

E

V

L

-

R

A

A

E

K

F

F

G

A

S

A

N

A

T

T

P

P

M

L

K

G

R

R

P

V

G

G

Q

R

P

P

D

E

E

E

V

L

A

A

P

A

A

A

Y

V

V

L

Y

F

L

L

A

A

S

S

S

D

D

D

A

S

Y

Y

V

V

S

A

G

G

Q

I

V

E

I

L

H

F

V

V

N

D

G

G

active site: S137 (= S177), H147 (≠ L187), Y150 (= Y190), K154 (= K194), Q195 (≠ T231)
binding nadp nicotinamide-adenine-dinucleotide phosphate: G13 (= G48), N15 (≠ D50), S16 (= S51), I18 (= I53), R38 (≠ Q77), R39 (≠ D78), A59 (≠ G98), D60 (= D99), V61 (= V100), N87 (= N126), S88 (≠ A127), G89 (≠ A128), V110 (≠ T150), S137 (= S177), Y150 (= Y190), K154 (= K194), G181 (= G221), I183 (= I223), T185 (= T225), I187 (≠ L227)

Query Sequence

>GFF2105 FitnessBrowser__psRCH2:GFF2105
MAEDNQTLPPQEQPEPGKEGLMNPRPEYRGEDYKAAGKLEGKTAIITGGDSGIGRSVAVL
FAREGADVAILYLDQHQDAEETRTVVEQYGRRCLTFAGDVADRDVCRKVIDETLAAFGKL
DILVNNAAEQHPQEKLEDISEEQWEKTFRTNIFGMFQMTKAVLPHLGKGASIINTTSVTA
YKGSPQLLDYSATKGAITAFTRSLSMNLAERGIRVNGVAPGPIWTPLISSTFDADEVAEF
GSNTPMKRPGQPDEVAPAYVYLASSDAAYVSGQVIHVNGGTVVNG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory