Comparing GFF2119 FitnessBrowser__Marino:GFF2119 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 9 hits to proteins with known functional sites (download)
6b2wA C. Jejuni c315s agmatine deiminase with substrate bound (see paper)
36% identity, 96% coverage: 1:320/332 of query aligns to 23:322/333 of 6b2wA
Sites not aligning to the query:
Q837U5 Putative agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Enterococcus faecalis (strain ATCC 700802 / V583) (see paper)
32% identity, 98% coverage: 2:328/332 of query aligns to 29:364/365 of Q837U5
3h7cX Crystal structure of arabidopsis thaliana agmatine deiminase from cell free expression
30% identity, 98% coverage: 2:328/332 of query aligns to 27:366/369 of 3h7cX
Q8GWW7 Agmatine deiminase; Agmatine iminohydrolase; Protein EMBRYO DEFECTIVE 1873; EC 3.5.3.12 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
30% identity, 98% coverage: 2:328/332 of query aligns to 27:373/383 of Q8GWW7
6nicD Crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide (see paper)
29% identity, 98% coverage: 2:328/332 of query aligns to 17:359/360 of 6nicD
G7JT50 Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
28% identity, 98% coverage: 2:328/332 of query aligns to 27:373/374 of G7JT50
6i0xB Porphyromonas gingivalis peptidylarginine deminase (ppad) mutant g231n/e232t/n235d in complex with cl-amidine. (see paper)
25% identity, 77% coverage: 70:326/332 of query aligns to 78:313/422 of 6i0xB
4ytbA Crystal structure of porphyromonas gingivalis peptidylarginine deiminase (ppad) in complex with dipeptide asp-gln. (see paper)
25% identity, 77% coverage: 70:326/332 of query aligns to 78:313/422 of 4ytbA
4ytgA Crystal structure of porphyromonas gingivalis peptidylarginine deiminase (ppad) mutant c351a in complex with dipeptide met-arg. (see paper)
25% identity, 72% coverage: 70:307/332 of query aligns to 78:292/417 of 4ytgA
Sites not aligning to the query:
>GFF2119 FitnessBrowser__Marino:GFF2119
MLTWPHPGTDWAGLIDEVEPVFLDIAKAVLPHEHLVISCEHVVRLQELERDLNRYAEDNG
FPGRVRSVPAPANDTWARDHGPITILTDEGPTLLDFRFNAWGGKFPWEKDDALNNHLFNA
GVFGTTRMQQVGFVLEGGSFESDGQGTLLTTSECLLTPTRNPAMDRTAIEQLLSEVLGIR
RILWLNHGYLAGDDTDSHIDTLARFCAPDHICYVTCPDVADEHYSALAAMEEELQEFRQA
DGAPYKLTPLPWPDAIHDEDGERLPATYANFLIINEAVLLPVYGVDQDQDAIAVMKEIFP
TRAIVPINCRPLIRQHGSLHCVTMQIPAGVVS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory