Comparing GFF2160 FitnessBrowser__Phaeo:GFF2160 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
P0AAC6 Modulator of FtsH protease YccA from Escherichia coli (strain K12) (see 2 papers)
31% identity, 44% coverage: 142:255/258 of query aligns to 113:214/219 of P0AAC6
Sites not aligning to the query:
>GFF2160 FitnessBrowser__Phaeo:GFF2160
MAQFDTIRSTAGARSAEIDAGLRAHMNKVYGTMAVGTFITFLAAWAISGLAVTTDPANAA
AQLSADRYLTSIGYALYASPLKWVIMFAPLAFVFGISAAANRMSAAGVQLLFYVFATVMG
LSISSIFLVFTGESIVQVFLITSIAFAGLSLVGYTTKKDLSGMGAFLIMGLIGLIVLAIA
NMFIASSVLANVISFVGVLIFAGLTAYDTQRIKNEYLQHAHMGDQEWLGKAAIMGALSLY
LDFINMFMMLLQLLGNRE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory