Comparing GFF2204 FitnessBrowser__Marino:GFF2204 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
Q7LYW7 Trehalose/maltose-binding protein MalE; TMBP from Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C) (see paper)
23% identity, 68% coverage: 129:523/580 of query aligns to 105:448/450 of Q7LYW7
Sites not aligning to the query:
1eu8A Structure of trehalose maltose binding protein from thermococcus litoralis (see paper)
23% identity, 68% coverage: 129:523/580 of query aligns to 64:407/407 of 1eu8A
Sites not aligning to the query:
>GFF2204 FitnessBrowser__Marino:GFF2204
MFNNNKYPRTLLLSAAVGVASLGLSLHVSADQYSEAAEKWVNEAFKNSTLSKEEQLKEME
WFTKAAEQFRGMDINVVSETIATHEYESNVLAKAFSEITGINLTHTLIQEGDVIEKLQTQ
MQSGRNIYDGYVNDSDLIGTHFRYGKVVAVEDIMNGAGKDLTLPTLDLDDFIGLDFTTGP
DGKLYQLPSQQFANLYWFRADWFEREDLQKQFKDIYGYDLGVPVNWSAYEDIAEFFSVHV
KEIDGERVYGHMDYGKKDPSLGWRFTDAWFSMAGAGDKGLPNGLPVDEWGIRVEECHPVG
SSVSRGGATNGPAAVYATEKYVDWLREYAPPEAQGMTFSEAGPVPAQGNVAQQIFWYTAF
TASMIKDGLPVVNEDGTPKWRMAPSPRGPYWEEGMKLGYQDVGSWTFLDSTPEKRRLAAW
LYAQFTVSKTVSLEKTIAGLTPIRESDIESEAMTEMAPKLGGLVEFYRSPARVQWSPTGT
NVPDYPKLAQLWWQYIAQAASGEATPQEALDGLAQAQDRVMERLERANVQPTCGPKLNEP
RDPQYWLDQPGAPKPKLANEKPQGKTVAYDELLKTWEEAR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory