Comparing GFF2207 FitnessBrowser__Marino:GFF2207 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
25% identity, 99% coverage: 4:269/269 of query aligns to 7:279/281 of P94530
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
24% identity, 75% coverage: 68:269/269 of query aligns to 87:294/296 of P68183
>GFF2207 FitnessBrowser__Marino:GFF2207
MMRQTRSKNVGITLFILLLLTPIYWLLNMSFKTNQEILGGLTLWPQNFTLDNYAVIFTDP
SWYNGYINSMIYVSINVVITLLVALPAAYAFSRYKFLGDKHLFFWLLSNRMAPPAVFLLP
FFQLYSSIGLFDTHIAVALAHCLFNVPLAVWILEGFMSGVPREYDEMAYIDGYSFPKFFV
KVFLPMIRSGIGVTAFFAFMFSWVELLLARTLTSVDAQPIGAIMTRTIGASGIDWGVLAA
AGSLTIIPGLLVIWFVRNHVAKGFALGRV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory