Comparing GFF2248 FitnessBrowser__Phaeo:GFF2248 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
7yleA Rndmpx in complex with dmsp (see paper)
58% identity, 92% coverage: 25:322/323 of query aligns to 1:298/299 of 7yleA
>GFF2248 FitnessBrowser__Phaeo:GFF2248
MFKISTGLGCVFAAAITASAAQADDCGEVSIMQGDWGSAQIVTAVAKFLMEEGYGCDVTA
MPLSSNPALASVSETGEPDILTEIWTNGAPAYQGLVDSGAIIPVTEVLSDGGVEGFFVPN
YLVEEHPELATIEGIAANPELVGNRFHNCPEGWTCLNVSTNLMKAGGLIDAGIENFVHGS
GETLAASIAAAYENKEPWFGFYWAPTSVLGKYPMTLVDMGPHDPEKHACNITAECDTPAM
SAFPRSEVVTVLSKEFMAENAEISELMTNLSFTNAQMGETLAWVEDNNASYDEGAVHFLT
TYKDVWGAWLNDAARDKLSALLQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory