SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF2248 FitnessBrowser__Phaeo:GFF2248 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

7yleA Rndmpx in complex with dmsp (see paper)
58% identity, 92% coverage: 25:322/323 of query aligns to 1:298/299 of 7yleA

query
sites
7yleA
D
 
E
C
 
C
G
 
G
E
 
E
V
 
V
S
 
S
I
 
I
M
 
T
Q
 
E
G
 
M
D
 
N
W
|
W
G
 
A
S
 
S
A
 
A
Q
 
S
I
 
V
V
 
V
T
 
T
A
 
T
V
 
V
A
 
A
K
 
T
F
 
F
L
 
L
M
 
M
E
 
E
E
 
Q
G
 
G
Y
 
Y
G
 
G
C
 
C
D
 
A
V
 
V
T
 
T
A
 
V
M
 
V
P
 
P
L
 
S
S
 
S
S
x
T
N
 
V
P
 
P
A
 
A
L
 
V
A
 
T
S
 
S
V
 
V
S
 
S
E
 
E
T
 
T
G
 
G
E
 
E
P
 
P
D
 
D
I
 
I
L
 
L
T
 
T
E
 
E
I
 
L
W
|
W
T
 
L
N
 
S
G
 
S
A
 
L
P
 
P
A
 
N
Y
 
Y
Q
 
A
G
 
K
L
 
L
V
 
E
D
 
A
S
 
Q
G
 
G
A
 
T
I
 
V
I
 
R
P
 
T
V
 
L
T
 
T
E
 
E
V
 
V
L
 
L
S
 
S
D
 
D
G
 
G
G
 
G
V
 
Q
E
 
E
G
 
G
F
 
W
F
 
W
V
 
V
P
 
P
N
 
Q
Y
 
Y
L
 
L
V
 
A
E
 
E
E
 
A
H
 
H
P
 
P
E
 
E
L
 
V
A
 
T
T
 
T
I
 
I
E
 
E
G
 
G
I
 
I
A
 
L
A
 
A
N
 
N
P
 
P
E
 
D
L
 
L
V
 
V
G
 
G
N
 
G
R
 
R
F
 
F
H
 
H
N
 
R
C
 
S
P
 
P
E
 
D
G
 
G
W
|
W
T
x
A
C
x
A
L
 
A
N
 
I
V
 
V
S
 
D
T
 
S
N
 
S
L
 
L
M
 
A
K
 
K
A
 
A
G
 
W
G
 
D
L
 
L
I
 
E
D
 
G
A
 
N
G
 
G
I
 
I
E
 
E
N
 
V
F
 
F
V
 
A
H
 
H
G
 
G
S
 
S
G
 
G
E
 
E
T
 
T
L
 
L
A
 
A
A
 
T
S
 
S
I
 
I
A
 
A
A
 
A
A
 
A
Y
 
Y
E
 
A
N
 
D
K
 
R
E
 
E
P
 
P
W
 
W
F
 
F
G
 
G
F
x
Y
Y
 
Y
W
|
W
A
 
A
P
 
P
T
 
T
S
 
S
V
 
V
L
 
L
G
 
G
K
 
K
Y
 
F
P
 
P
M
 
M
T
 
V
L
 
M
V
 
V
D
 
D
M
 
L
G
 
G
P
 
E
H
 
F
D
 
D
P
 
A
E
 
D
K
 
I
H
 
H
A
 
A
C
 
C
N
 
N
I
 
S
T
 
K
A
 
A
E
 
D
C
 
C
D
 
A
T
 
N
P
 
V
A
 
G
M
 
K
S
 
S
A
 
P
F
 
Y
P
 
P
R
 
R
S
 
A
E
 
R
V
 
V
V
 
I
T
 
T
V
 
A
L
 
V
S
 
T
K
 
P
E
 
G
F
 
F
M
 
A
A
 
E
E
 
E
N
 
N
A
 
P
E
 
E
I
 
I
S
 
I
E
 
E
L
 
M
M
 
L
T
 
S
N
 
N
L
 
L
S
 
S
F
 
F
T
 
T
N
 
N
A
 
D
Q
 
Q
M
 
M
G
 
G
E
 
A
T
 
I
L
 
L
A
 
A
W
 
W
V
 
Q
E
 
E
D
 
E
N
 
N
N
 
G
A
 
A
S
 
S
Y
 
S
D
 
E
E
 
E
G
 
A
A
 
A
V
 
V
H
 
W
F
 
F
L
 
L
T
 
S
T
 
N
Y
 
N
K
 
S
D
 
D
V
 
I
W
 
W
G
 
A
A
 
G
W
 
W
L
 
V
N
 
N
D
 
D
A
 
A
A
 
A
R
 
R
D
 
E
K
 
N
L
 
L
S
 
A
A
 
A
L
 
L
L
 
I

Query Sequence

>GFF2248 FitnessBrowser__Phaeo:GFF2248
MFKISTGLGCVFAAAITASAAQADDCGEVSIMQGDWGSAQIVTAVAKFLMEEGYGCDVTA
MPLSSNPALASVSETGEPDILTEIWTNGAPAYQGLVDSGAIIPVTEVLSDGGVEGFFVPN
YLVEEHPELATIEGIAANPELVGNRFHNCPEGWTCLNVSTNLMKAGGLIDAGIENFVHGS
GETLAASIAAAYENKEPWFGFYWAPTSVLGKYPMTLVDMGPHDPEKHACNITAECDTPAM
SAFPRSEVVTVLSKEFMAENAEISELMTNLSFTNAQMGETLAWVEDNNASYDEGAVHFLT
TYKDVWGAWLNDAARDKLSALLQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory