Comparing GFF2278 FitnessBrowser__Marino:GFF2278 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
2yjvC Crystal structure of e. Coli regulator of ribonuclease activity a (rraa) bound to fragment of dead-box protein rhlb (see paper)
51% identity, 96% coverage: 6:158/159 of query aligns to 4:157/158 of 2yjvC
1nxjA Structure of rv3853 from mycobacterium tuberculosis (see paper)
47% identity, 93% coverage: 6:153/159 of query aligns to 7:155/156 of 1nxjA
3nojA The structure of hmg/cha aldolase from the protocatechuate degradation pathway of pseudomonas putida (see paper)
29% identity, 70% coverage: 31:141/159 of query aligns to 55:166/235 of 3nojA
A5W059 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase; HMG/CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) (see paper)
29% identity, 70% coverage: 31:141/159 of query aligns to 56:167/238 of A5W059
>GFF2278 FitnessBrowser__Marino:GFF2278
MTTIITPDLCDEFPEVLVVEPGFNNYGGNKAFGGEIVTVKCFEDNSVVKEQVGQPGNGRV
MVVDGGASKRHALLGDMLAEKAASNGWAGLIIYGCVRDVDEIGNTALGVQALGTHPRKSE
KRGLGDLNVPVTFHGVTFHPGHYVYADNNGIIVSEKPLV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory