Comparing GFF2366 FitnessBrowser__WCS417:GFF2366 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
42% identity, 98% coverage: 6:491/495 of query aligns to 4:488/501 of P04983
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
25% identity, 45% coverage: 6:226/495 of query aligns to 4:233/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
25% identity, 45% coverage: 6:226/495 of query aligns to 4:233/253 of 1g9xB
3c4jA Abc protein artp in complex with atp-gamma-s
28% identity, 45% coverage: 6:230/495 of query aligns to 3:225/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
28% identity, 45% coverage: 6:230/495 of query aligns to 3:225/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
28% identity, 45% coverage: 6:230/495 of query aligns to 3:225/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
28% identity, 45% coverage: 6:230/495 of query aligns to 3:225/242 of 2oljA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
27% identity, 45% coverage: 6:230/495 of query aligns to 2:223/241 of 4u00A
3fvqB Crystal structure of the nucleotide binding domain fbpc complexed with atp (see paper)
30% identity, 46% coverage: 260:488/495 of query aligns to 3:228/350 of 3fvqB
P07821 Iron(3+)-hydroxamate import ATP-binding protein FhuC; Ferric hydroxamate uptake protein C; Ferrichrome transport ATP-binding protein FhuC; Iron(III)-hydroxamate import ATP-binding protein FhuC; EC 7.2.2.16 from Escherichia coli (strain K12) (see 2 papers)
29% identity, 46% coverage: 27:252/495 of query aligns to 32:257/265 of P07821
8k1oB Mycobacterial efflux pump, amppnp bound state
31% identity, 44% coverage: 12:227/495 of query aligns to 11:215/215 of 8k1oB
8k1pB Mycobacterial efflux pump, adp+vanadate bound state
31% identity, 44% coverage: 12:227/495 of query aligns to 9:213/213 of 8k1pB
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
26% identity, 44% coverage: 12:230/495 of query aligns to 7:223/240 of 4ymuJ
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
24% identity, 49% coverage: 6:247/495 of query aligns to 2:240/240 of 6mjpA
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
29% identity, 43% coverage: 272:484/495 of query aligns to 23:225/226 of 5xu1B
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
24% identity, 48% coverage: 1:237/495 of query aligns to 1:233/240 of 1ji0A
6bppA E. Coli msba in complex with lps and inhibitor g092 (see paper)
29% identity, 48% coverage: 7:242/495 of query aligns to 339:571/576 of 6bppA
Sites not aligning to the query:
6bplA E. Coli msba in complex with lps and inhibitor g907 (see paper)
29% identity, 48% coverage: 7:242/495 of query aligns to 339:571/576 of 6bplA
Sites not aligning to the query:
7ph3A Amp-pnp bound nanodisc reconstituted msba with nanobodies, spin- labeled at position a60c (see paper)
29% identity, 48% coverage: 7:242/495 of query aligns to 340:572/577 of 7ph3A