Comparing GFF248 FitnessBrowser__Marino:GFF248 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4xg1B Psychromonas ingrahamii diaminopimelate decarboxylase with llp
62% identity, 100% coverage: 2:415/416 of query aligns to 1:417/418 of 4xg1B
4xg1A Psychromonas ingrahamii diaminopimelate decarboxylase with llp
56% identity, 100% coverage: 2:415/416 of query aligns to 1:392/393 of 4xg1A
B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori) (see paper)
44% identity, 91% coverage: 27:406/416 of query aligns to 13:393/405 of B4XMC6
3c5qA Crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine
44% identity, 91% coverage: 27:406/416 of query aligns to 11:385/394 of 3c5qA
1tufA Crystal structure of diaminopimelate decarboxylase from m. Jannaschi (see paper)
38% identity, 100% coverage: 2:415/416 of query aligns to 5:431/434 of 1tufA
1twiA Crystal structure of diaminopimelate decarboxylase from m. Jannaschii in co-complex with l-lysine (see paper)
38% identity, 100% coverage: 2:415/416 of query aligns to 5:431/434 of 1twiA
Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
38% identity, 100% coverage: 2:415/416 of query aligns to 9:435/438 of Q58497
6n2aA Meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1)
40% identity, 96% coverage: 8:408/416 of query aligns to 10:416/422 of 6n2aA
Q9X1K5 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
39% identity, 93% coverage: 21:406/416 of query aligns to 7:379/386 of Q9X1K5
2yxxA Crystal structure analysis of diaminopimelate decarboxylate (lysa)
39% identity, 93% coverage: 21:406/416 of query aligns to 6:378/385 of 2yxxA
1hkvA Mycobacterium diaminopimelate dicarboxylase (lysa) (see paper)
32% identity, 95% coverage: 16:411/416 of query aligns to 28:444/446 of 1hkvA
P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
32% identity, 95% coverage: 16:411/416 of query aligns to 29:445/447 of P9WIU7
5x7mA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
31% identity, 97% coverage: 8:412/416 of query aligns to 22:443/443 of 5x7mA
5x7nA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
31% identity, 97% coverage: 8:411/416 of query aligns to 22:442/442 of 5x7nA
P00861 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain K12)
31% identity, 95% coverage: 8:404/416 of query aligns to 9:411/420 of P00861
1knwA Crystal structure of diaminopimelate decarboxylase
31% identity, 95% coverage: 8:404/416 of query aligns to 8:410/421 of 1knwA
1ko0A Crystal structure of a d,l-lysine complex of diaminopimelate decarboxylase
31% identity, 95% coverage: 8:404/416 of query aligns to 8:410/419 of 1ko0A
7ru7A Crystal structure of btrk, a decarboxylase involved in butirosin biosynthesis
28% identity, 95% coverage: 18:411/416 of query aligns to 8:410/412 of 7ru7A
8d5rA Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- ornithine (see paper)
25% identity, 97% coverage: 4:408/416 of query aligns to 23:452/461 of 8d5rA
8d5dA Structure of y430f d-ornithine/d-lysine decarboxylase complex with d- arginine (see paper)
25% identity, 97% coverage: 4:408/416 of query aligns to 22:450/458 of 8d5dA
>GFF248 FitnessBrowser__Marino:GFF248
MDHFNYRDGELYAEDIPVSAIADRFGTPAYVYSRATLERHYRAYDDALRDHPHLVCYAVK
ANSNLAVLNVLARLGAGFDIVSAGELERVLRAGGDPSRVVFSGVGKQEWEMKRALEVGVR
CFNVESDTELDRLNAVAGELGVKAPISLRVNPDVDAGTHPYISTGLKENKFGIDIAEASQ
VYARAAGMPNLDVKGVDCHIGSQLTSVSPFLDALDRVLALIDSLADQGIHIHHLDMGGGL
GVTYNQEQPPQPSDYVKALAERLGDRKLELILEPGRSIAANAGILVTRVEFLKCTEHRNF
AIIDAAMNDLIRPALYSAWQAIIPVKPHQDGEEKAWDLVGPVCETGDFLGKDRHLRLQAG
DLLAVRSAGAYGFVMSSNYNTRNRPPELMVDGDQVHVVRRRETLEDQLAPESCLPE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory