SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF2512 FitnessBrowser__Marino:GFF2512 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
31% identity, 84% coverage: 14:93/95 of query aligns to 13:92/564 of 3al0C

query
sites
3al0C
L
 
L
A
 
A
R
 
R
I
 
L
R
 
E
V
 
L
D
 
S
D
 
E
E
 
D
Q
 
Q
V
 
R
S
 
E
A
 
S
L
 
L
E
 
M
K
 
K
D
 
D
L
 
F
G
 
Q
N
 
E
I
 
I
L
 
L
D
 
D
L
 
Y
V
 
V
D
 
E
Q
 
L
L
 
L
A
 
N
A
 
E
A
 
V
D
 
D
T
 
V
D
 
E
S
 
G
V
 
V
E
 
E
P
 
P
M
 
M
A
 
Y
H
 
T
P
 
P
L
 
V
N
 
E
A
 
D
V
 
S
Q
 
A
R
 
K
L
 
L
R
 
R
A
 
K
D
 
G
E
 
D
V
 
P
T
 
R
E
 
F
T
 
F
N
 
E
Q
 
M
R
 
R
E
 
D
A
 
L
F
 
I
Q
 
K
A
 
K
I
 
N
A
 
F
P
 
P
A
 
E
T
 
E
E
 
K
N
 
D
G
 
G
L
 
H
Y
 
I
L
 
K
V
 
V
P
 
P
R
 
G
V
 
I

Sites not aligning to the query:

Query Sequence

>GFF2512 FitnessBrowser__Marino:GFF2512
MTISREDIEKVAVLARIRVDDEQVSALEKDLGNILDLVDQLAAADTDSVEPMAHPLNAVQ
RLRADEVTETNQREAFQAIAPATENGLYLVPRVIE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory