Comparing GFF2619 PGA1_c26600 amino acid ABC transporter, permease protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
38% identity, 80% coverage: 50:267/273 of query aligns to 16:215/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
38% identity, 79% coverage: 50:266/273 of query aligns to 16:214/214 of 4ymwC
>GFF2619 PGA1_c26600 amino acid ABC transporter, permease protein
MSAQEPKPRRPDGKKDDFPWWLAAVLLIGGTLIWRVASDDLYLSILSTLMRGVQLTIFVT
LISFFLASLLGLGLALAAGSRWLVIRQGARFYIEVVRGIPIIVLLLYVAFVLAPALVELR
NWLGDHIGLDPIRTRNFPLLWRAIIALMIAYSAFISEVFRAGLQSVDEGQIEAAKSLGLS
RWHRFRFIVFPQAIRTILPPLGNDFVALVKDSSLVSVLGVADVTQLGKLTAVGNFRYFET
YNVVALIYLTLTIGLSLLLRRFEKHLRRREERR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory