Comparing GFF2640 FitnessBrowser__psRCH2:GFF2640 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2azqA Crystal structure of catechol 1,2-dioxygenase from pseudomonas arvilla c-1 (see paper)
72% identity, 99% coverage: 3:311/313 of query aligns to 1:307/309 of 2azqA
P07773 Catechol 1,2-dioxygenase; 1,2-CTD; EC 1.13.11.1 from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) (see paper)
55% identity, 98% coverage: 1:308/313 of query aligns to 1:308/311 of P07773
1dmhA Structure of catechol 1,2-dioxygenase from acinetobacter sp. Adp1 with bound 4-methylcatechol (see paper)
55% identity, 98% coverage: 3:308/313 of query aligns to 1:306/309 of 1dmhA
1dltA Structure of catechol 1,2-dioxygenase from acinetobacter sp. Adp1 with bound catechol (see paper)
55% identity, 98% coverage: 3:308/313 of query aligns to 1:306/309 of 1dltA
1dlmA Structure of catechol 1,2-dioxygenase from acinetobacter calcoaceticus native data (see paper)
55% identity, 98% coverage: 3:308/313 of query aligns to 1:306/309 of 1dlmA
5umhB Crystal structure of catechol 1,2-dioxygenase protein from burkholderia multivorans
48% identity, 100% coverage: 2:313/313 of query aligns to 1:310/310 of 5umhB
2xsrA Crystal structure of wild type acinetobacter radioresistens catechol 1,2 dioxygenase (see paper)
54% identity, 88% coverage: 29:305/313 of query aligns to 28:307/309 of 2xsrA
5td3A Crystal structure of catechol 1,2-dioxygenase from burkholderia vietnamiensis
47% identity, 98% coverage: 3:309/313 of query aligns to 1:305/307 of 5td3A
5vxtB Crystal structure of catechol 1,2-dioxygenase from burkholderia ambifaria
48% identity, 99% coverage: 1:309/313 of query aligns to 5:309/312 of 5vxtB
3hgiA Crystal structure of catechol 1,2-dioxygenase from the gram-positive rhodococcus opacus 1cp (see paper)
38% identity, 55% coverage: 100:271/313 of query aligns to 75:246/258 of 3hgiA
3hj8A Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1cp in complex with 4-chlorocatechol (see paper)
38% identity, 55% coverage: 100:271/313 of query aligns to 74:245/257 of 3hj8A
Sites not aligning to the query:
3i51A Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1cp in complex with 4,5-dichlorocatechol (see paper)
38% identity, 55% coverage: 100:271/313 of query aligns to 73:244/256 of 3i51A
Sites not aligning to the query:
3i4yA Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1cp in complex with 3,5-dichlorocatechol (see paper)
38% identity, 55% coverage: 100:271/313 of query aligns to 73:244/256 of 3i4yA
Sites not aligning to the query:
3i4vA Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1cp in complex with 3-chlorocatechol (see paper)
38% identity, 55% coverage: 100:271/313 of query aligns to 73:244/256 of 3i4vA
3hjsA Crystal structure of catechol 1,2-dioxygenase from rhodococcus opacus 1cp in complex with 4-methylcatechol (see paper)
38% identity, 55% coverage: 100:271/313 of query aligns to 73:244/256 of 3hjsA
Sites not aligning to the query:
3hjqA Crystal structure of catechol 1,2-dioxygenase from rhodococcus opacus 1cp in complex with 3-methylcatechol (see paper)
38% identity, 55% coverage: 100:271/313 of query aligns to 73:244/256 of 3hjqA
Sites not aligning to the query:
3hhyA Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1cp in complex with catechol (see paper)
38% identity, 55% coverage: 100:271/313 of query aligns to 73:244/256 of 3hhyA
Sites not aligning to the query:
3hhxA Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1cp in complex with pyrogallol (see paper)
38% identity, 55% coverage: 100:271/313 of query aligns to 73:244/256 of 3hhxA
Sites not aligning to the query:
2boyA Crystal structure of 3-chlorocatechol 1,2-dioxygenase from rhodococcus opacus 1cp (see paper)
27% identity, 77% coverage: 27:268/313 of query aligns to 2:235/253 of 2boyA
3n9tA Cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas putida dll-e4
31% identity, 75% coverage: 27:260/313 of query aligns to 21:251/286 of 3n9tA
>GFF2640 FitnessBrowser__psRCH2:GFF2640
MTVKISQTSDVQNFFKEASGFGNDAGSSRMKTVINRILVDTAKIVEDLEITQDEFWKAVD
YLNRLGGRHEAGLLVAGLGLEHFLDLLEDAKDEQQGLTGGTPRTIEGPLYVAGAPISQAE
TRMDDGSELDVATVMFLQGQVTGPDGKPVANAVVDLWHANTKGNYSYFDKSQSEYNLRRR
IVTDENGNYRARSIVPSGYGCSLDGPTQEVLDHLGRHGRRPAHIHFFISAPGHRHLTTQI
NLAGDEYLWDDFAYATRDGLVGDIRFVEDAEAARARGIEGSRFAELTFDFQLQAAPAPEA
EQRSARPRALQNA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory