Comparing GFF2664 FitnessBrowser__psRCH2:GFF2664 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
1yw4A Crystal structure of the succinylglutamate desuccinylase from chromobacterium violaceum, northeast structural genomics target cvr22.
38% identity, 90% coverage: 25:324/332 of query aligns to 23:314/319 of 1yw4A
2bcoA X-ray structure of succinylglutamate desuccinalase from vibrio parahaemolyticus (rimd 2210633) at the resolution 2.3 a, northeast structural genomics target vpr14
30% identity, 93% coverage: 22:331/332 of query aligns to 22:334/338 of 2bcoA
>GFF2664 FitnessBrowser__psRCH2:GFF2664
MLALGKLLELTLAGREPCEKVQLTPRGVKLHWLADGALLVSPPPGQDQGLDLLLSAGIHG
NELIPIHVLDRLVRALARDDVRPRAPLLLLFANPAAMRRMVRQVEHDLNRLFRGEHADVW
GGEAIRAAELEALVGGFFSGAGRQRRHYDLHSALRPSRLAQFAICPWRECEQVSAESLTR
LDRLAIEGVLLQRQATSTFSAMTSTRYGAEAFTLELAEGAGESLPVAVVQFERGLYGMIE
GREAPVAAHALPQLLQISREVIKRSPRFRLCVPSDIENFAPLPLGSVLAEDDGARWVIDE
PGARILFPMADVAEGQRAALIVVPLEQTEGER
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory