SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF2696 FitnessBrowser__Marino:GFF2696 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1yleA The structure of arginine/ornithine succinyltransferase subunit ai from pseudomonas aeruginosa.
33% identity, 83% coverage: 7:319/379 of query aligns to 4:296/330 of 1yleA

query
sites
1yleA
M
 
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S
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F
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A
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E
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S
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Y
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N
G
 
G
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E
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E
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S
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Y
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F
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G
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S
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A
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G
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D

Query Sequence

>GFF2696 FitnessBrowser__Marino:GFF2696
MPRKIAMIIRPITPKDLDALMQIAVESGPGFTSLMPDRDALSRKIDHSVESFARTVTTPG
DEHYLFVLEDSATGQIMGTTGIEAAAGLSRPLVHFRRNAVIHHEEDPRKRHAEESLTRCQ
HYTGCTEVCSLYLRPGFRRANAGKLLSRVRFLFMALHPERFADTVIAEMRGVSDHAGRSP
FWDWLKHHVADLDFMSATQLACCGQSGFVERFIPATPLFTRQMTDAARAVIGQVHEDTRP
ARHMLEREGFRHRGFVDLLDGGPTLECARSDIASVRDTLLTRARLQKGNRSSWNIAGNTV
GSAIVANAGCSGFRATVTEQVLPNPDANSLSVPEQLANELNLGGYSLACYLPLGQSREES
QGRQQPCQKPVTEEIRYAH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory