Comparing GFF2745 FitnessBrowser__Marino:GFF2745 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
Q54VI3 Glutamate dehydrogenase 2; NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Dictyostelium discoideum (Social amoeba) (see paper)
25% identity, 39% coverage: 256:698/1128 of query aligns to 483:896/1042 of Q54VI3
>GFF2745 FitnessBrowser__Marino:GFF2745
MARMVEESRSWDDDLHGELVRSFGESIGGRYAQVFSGGFPSAYRARFPVSEALADIGQIQ
SIAVSTDVPMRFYQPRDPSETGFHFKLYSEGQPVILSDVIPILENLGMRVLGEHPYRVRR
RDGENFGVSDFTVELHDRCRQADLSAARPLIQSAFREIWNGFAENDDFNQLIMLCGLNWR
EVALIRAYARYVKQLRFGFSQPFIAETLARHPDITSRLVAFFFNRFEPGVKGRKSRTEKL
EAELRDSLEAVASLDDDRILRRFFMLIRATLRTNYFQVREDGGFPSYLSLKLDPSSIPDI
PRPRPKFEIFVYSPRIEGVHLRAGPVARGGLRWSDRIEDYRTEILGLVKAQQVKNSVIVP
AGAKGGFVVKQPPRDGSREAVREEGVACYQTFIRGLLDITDNLDDGQVVPPANVVRYDSD
DTYLVVAADKGTATFSDIANALAAEYNFWLGDAFASGGSEGYDHKKMGITARGAWESVKR
HFLEKGTDTQSDEFTVVGIGDMGGDVFGNGMLLSDQIRLIGAFNHQHIFVDPDPDAAASF
RERERLFKLSGSSWADYDTQLISDGGGVFSRSMKSIPVSSQMRKVLGIKARSLSPADLIS
ALLKAPVDMLWNGGIGTYVKAPSESHEDVGDKTNDALRIDSNELRCKALGEGGNLGVTQK
ARIDFARRGGSVNSDFIDNAGGVDCSDHEVNIKILLNDLVHRQLMSLPERNRMLRAMTSE
VAELVLRNNYRQAMALSLAQNPAVATADQYERLMRRLETEGKLDRSLEFLPSDEELQARR
EHGGGLTRPELAVLVSYAKIELKQALVASPIVHDPRFNSALHSAFPASLLAAFPEAVGAH
PLRAEISATQIANDMVNRMGITWFDRIRSATGADAGRIASAYLISLRIHDVDAHWESMEL
LDGKIDAGVQADLFADAIRLVTRSTSWLLQNRRQALDPVSCIDHYRAPMSDVLASKSRLE
SVIPASRWYERYAEYCERMVPEDLSAWCASAESRYWLMDMVEIARQLDEKLESVAWVYFT
LGESLNLTWLDRQMRAFRANGHWQVLATIHFRDELDHQLRNLTLSVFSEPVDGDGTPEKR
IEAWRGNKRMLLARWERMLNDMQAANDVDCAVFSVAHGVLRELALKAA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory