Comparing GFF2757 FitnessBrowser__Phaeo:GFF2757 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 12 hits to proteins with known functional sites (download)
P9WKJ5 Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
32% identity, 81% coverage: 68:560/607 of query aligns to 51:535/575 of P9WKJ5
6ovtA Crystal structure of ilvd from mycobacterium tuberculosis (see paper)
32% identity, 81% coverage: 68:560/607 of query aligns to 38:522/562 of 6ovtA
8hs0A The mutant structure of dhad v178w
31% identity, 80% coverage: 114:598/607 of query aligns to 94:566/570 of 8hs0A
Sites not aligning to the query:
Q9LIR4 Dihydroxy-acid dehydratase, chloroplastic; AthDHAD; DAD; EC 4.2.1.9 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
31% identity, 80% coverage: 114:598/607 of query aligns to 132:604/608 of Q9LIR4
Sites not aligning to the query:
B5ZZ34 L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum bv. trifolii (strain WSM2304) (see 2 papers)
29% identity, 87% coverage: 69:598/607 of query aligns to 47:561/579 of B5ZZ34
5j85A Ser480ala mutant of l-arabinonate dehydratase (see paper)
29% identity, 87% coverage: 69:598/607 of query aligns to 44:558/576 of 5j85A
Q1JUQ1 L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense (see paper)
28% identity, 87% coverage: 69:598/607 of query aligns to 44:565/583 of Q1JUQ1
8epzA Crystal structure of fe-s cluster-dependent dehydratase from paralcaligenes ureilyticus in complex with mn
28% identity, 81% coverage: 69:557/607 of query aligns to 39:511/569 of 8epzA
8ej0A Crystal structure of fe-s cluster-dependent dehydratase from paralcaligenes ureilyticus in complex with mg
28% identity, 81% coverage: 69:557/607 of query aligns to 38:510/568 of 8ej0A
Q9A9Z2 D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus) (see 2 papers)
27% identity, 88% coverage: 69:600/607 of query aligns to 52:577/595 of Q9A9Z2
5oynA Crystal structure of d-xylonate dehydratase in holo-form (see paper)
27% identity, 88% coverage: 69:600/607 of query aligns to 46:571/589 of 5oynA
7m3kA Crystal structure of galactonate dehydratase from brucella melitensis biovar abortus 2308
27% identity, 88% coverage: 69:600/607 of query aligns to 41:571/587 of 7m3kA
>GFF2757 FitnessBrowser__Phaeo:GFF2757
MRLNQTVRDVTDRIIARSAKPRAAYLDRMRAAKGKGPARAHLSCSGQAHAYAATGEDQMP
LAEGTAGHLGIVTAYNDMLSAHQPFETYPQRIRDAVRRVGGTAQVAGGVPAMCDGVTQGE
AGMELSLFSRDTIAMATGIALSHNVFDATVYLGVCDKIVPGLVIGAQVFGHLPAVFLPAG
PMTSGISNDDKAKVRQKFAAGEIGRDELLKSEMAAYHGPGTCTFYGTANTNQMLMEFMGL
HLPGSSFVNPGTDMRAALTEEGARRALALSALGNDYTPVCDILDERAYVNGIVGLMTTGG
STNLLIHLIAMARAGGIILDWQDFSELSDVVPLLARVYPNGLADVNHFHAAGGLGYVIGQ
LLNSGHLHSDTRTVAGSGLESYTAEPFLSDDGLVWKPGAAESLNDKIIRPASAPFQPTGG
LARLSGNLGTGVMKISAVAPEHRMVEAPARVFHDQEEVKAAFKAGELDKGDMIIVVRFQG
PKANGMPELHSMTPFLGIMQGRGQKVALVTDGRMSGASGKIPSAIHVVPEALDGGPISKL
RDGDMVRVDALTGTLEVKAEGFDDRDPVVADLSAYQHGTGREMFALFRNAVTSADTGATV
FSTLIGD
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory