SitesBLAST
Comparing GFF2758 FitnessBrowser__Marino:GFF2758 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P77455 Bifunctional protein PaaZ; EC 3.3.2.12; EC 1.2.1.91 from Escherichia coli (strain K12) (see paper)
55% identity, 99% coverage: 5:683/685 of query aligns to 1:675/681 of P77455
- E256 (= E259) mutation to Q: Catalyzes the formation of 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde instead of 3-oxo-5,6-dehydrosuberyl-CoA.
6jqoA Structure of paaz, a bifunctional enzyme in complex with NADP+ and ccoa (see paper)
55% identity, 99% coverage: 8:683/685 of query aligns to 3:674/678 of 6jqoA
- active site: N157 (= N161), E255 (= E259), C294 (= C298), L483 (= L492)
- binding crotonyl coenzyme a: V97 (≠ I101), F107 (= F111), S111 (= S115), F158 (= F162), W161 (= W165), R638 (≠ T647)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: N154 (≠ D158), F156 (≠ Y160), N157 (= N161), T183 (= T187), T230 (= T234), G231 (= G235), S232 (= S236), T235 (= T239), A256 (= A260), D257 (= D261), C294 (= C298)
6jqnA Structure of paaz, a bifunctional enzyme in complex with NADP+ and ocoa (see paper)
55% identity, 99% coverage: 8:683/685 of query aligns to 3:674/678 of 6jqnA
- active site: N157 (= N161), E255 (= E259), C294 (= C298), L483 (= L492)
- binding octanoyl-coenzyme a: F562 (= F571), H565 (= H574), F576 (= F585), G583 (= G592), V595 (= V604), A604 (= A613), N605 (= N614), Y606 (= Y615), F613 (= F622), I614 (= I623)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: R19 (≠ K23), I153 (= I157), N154 (≠ D158), A155 (= A159), F156 (≠ Y160), K180 (= K184), A182 (= A186), T183 (= T187), T230 (= T234), G231 (= G235), S232 (= S236), T235 (= T239), L239 (= L243), E255 (= E259), A256 (= A260), D257 (= D261), C294 (= C298), F396 (= F405), H471 (= H480)
6jqmA Structure of paaz with NADPH (see paper)
55% identity, 99% coverage: 8:683/685 of query aligns to 3:674/678 of 6jqmA
- active site: N157 (= N161), E255 (= E259), C294 (= C298), L483 (= L492)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: R19 (≠ K23), I153 (= I157), N154 (≠ D158), A155 (= A159), F156 (≠ Y160), N157 (= N161), K180 (= K184), A182 (= A186), T183 (= T187), G231 (= G235), S232 (= S236), T235 (= T239), A256 (= A260), D257 (= D261), C294 (= C298), E394 (= E403), F396 (= F405)
2vroA Crystal structure of aldehyde dehydrogenase from burkholderia xenovorans lb400 (see paper)
42% identity, 69% coverage: 7:480/685 of query aligns to 5:484/521 of 2vroA
- active site: N160 (= N161), K183 (= K184), E258 (= E259), C297 (= C298), E401 (= E403)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I156 (= I157), K183 (= K184), S217 (≠ T218), S235 (= S236), T238 (= T239), L242 (= L243), F403 (= F405)
Sites not aligning to the query:
2y53A Crystal structure of e257q mutant of the box pathway encoded aldh from burkholderia xenovorans lb400 (see paper)
42% identity, 69% coverage: 7:480/685 of query aligns to 5:483/529 of 2y53A
- active site: N160 (= N161), K183 (= K184), Q258 (≠ E259), C297 (= C298), E401 (= E403)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: I156 (= I157), N157 (≠ D158), F159 (≠ Y160), N160 (= N161), K183 (= K184), A185 (= A186), T186 (= T187), S217 (≠ T218), F232 (= F233), G234 (= G235), S235 (= S236), A236 (= A237), T238 (= T239), A259 (= A260), D260 (= D261), C297 (= C298), F403 (= F405)
Sites not aligning to the query:
3ty7B Crystal structure of aldehyde dehydrogenase family protein from staphylococcus aureus
28% identity, 44% coverage: 152:452/685 of query aligns to 139:429/454 of 3ty7B
Sites not aligning to the query:
4cazA Crystal structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa in complex with nadh
27% identity, 73% coverage: 9:508/685 of query aligns to 7:479/489 of 4cazA
- active site: N152 (= N161), K175 (= K184), E251 (= E259), C285 (= C298), E386 (= E403), E463 (= E491)
- binding [[(2R,3S,4R,5R)-5-[(3R)-3-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate: I148 (= I157), G149 (≠ D158), W151 (≠ Y160), N152 (= N161), K175 (= K184), E178 (≠ T187), G208 (≠ T218), G212 (≠ F222), F226 (= F233), T227 (= T234), G228 (= G235), G229 (≠ S236), T232 (= T239), V236 (≠ L243), E251 (= E259), L252 (≠ A260), C285 (= C298), E386 (= E403), F388 (= F405)
2woxA Betaine aldehyde dehydrogenase from pseudomonas aeruginosa with NAD(p) h-catalytic thiol adduct. (see paper)
27% identity, 73% coverage: 9:508/685 of query aligns to 7:479/489 of 2woxA
- active site: N152 (= N161), K175 (= K184), E251 (= E259), C285 (= C298), E386 (= E403), E463 (= E491)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I148 (= I157), G149 (≠ D158), W151 (≠ Y160), N152 (= N161), K175 (= K184), S177 (≠ A186), E178 (≠ T187), G208 (≠ T218), G212 (≠ F222), F226 (= F233), T227 (= T234), G228 (= G235), G229 (≠ S236), T232 (= T239), V236 (≠ L243), E251 (= E259), L252 (≠ A260), C285 (= C298), E386 (= E403), F388 (= F405)
2wmeA Crystallographic structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa (see paper)
27% identity, 73% coverage: 9:508/685 of query aligns to 7:479/489 of 2wmeA
- active site: N152 (= N161), K175 (= K184), E251 (= E259), C285 (= C298), E386 (= E403), E463 (= E491)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G149 (≠ D158), W151 (≠ Y160), K175 (= K184), S177 (≠ A186), E178 (≠ T187), G208 (≠ T218), G212 (≠ F222), F226 (= F233), G228 (= G235), G229 (≠ S236), T232 (= T239), V236 (≠ L243)
Q9HTJ1 NAD/NADP-dependent betaine aldehyde dehydrogenase; BADH; EC 1.2.1.8 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
27% identity, 73% coverage: 9:508/685 of query aligns to 8:480/490 of Q9HTJ1
- GAWN 150:153 (≠ DAYN 158:161) binding
- K162 (= K170) active site, Charge relay system
- KPSE 176:179 (≠ KPAT 184:187) binding
- G209 (≠ T218) binding
- GTST 230:233 (≠ SAAT 236:239) binding
- E252 (= E259) active site, Proton acceptor
- C286 (= C298) binding covalent; modified: Cysteine sulfenic acid (-SOH)
- E387 (= E403) binding
- E464 (= E491) active site, Charge relay system
4neaA 1.90 angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betb) from staphylococcus aureus in complex with NAD+ and bme-free cys289 (see paper)
24% identity, 73% coverage: 9:508/685 of query aligns to 19:498/505 of 4neaA
- active site: N166 (= N161), K189 (= K184), E264 (≠ P255), C298 (= C298), E399 (= E403), E476 (≠ A486)
- binding nicotinamide-adenine-dinucleotide: P164 (≠ A159), K189 (= K184), E192 (≠ T187), G222 (vs. gap), G226 (= G219), G242 (= G235), G243 (≠ S236), T246 (= T239), H249 (≠ K242), I250 (≠ L243), C298 (= C298), E399 (= E403), F401 (= F405)
3b4wA Crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase complexed with NAD+
26% identity, 52% coverage: 152:507/685 of query aligns to 145:475/483 of 3b4wA
- active site: N154 (= N161), K177 (= K184), E251 (= E259), C285 (= C298), E384 (= E403), E460 (≠ A486)
- binding nicotinamide-adenine-dinucleotide: I150 (= I157), V151 (≠ D158), W153 (≠ Y160), N154 (= N161), K177 (= K184), I210 (vs. gap), G213 (= G219), T228 (= T234), G229 (= G235), S230 (= S236), V233 (≠ T239), E236 (≠ K242), E251 (= E259), L252 (≠ A260), C285 (= C298), E384 (= E403), F386 (= F405)
Q9H2A2 2-aminomuconic semialdehyde dehydrogenase; Aldehyde dehydrogenase 12; Aldehyde dehydrogenase family 8 member A1; EC 1.2.1.32 from Homo sapiens (Human) (see paper)
26% identity, 49% coverage: 152:490/685 of query aligns to 146:472/487 of Q9H2A2
- N155 (= N161) mutation to A: Complete loss of activity.
- R451 (≠ K466) mutation to A: Complete loss of activity.
Sites not aligning to the query:
- 109 R→A: About 65-fold loss of catalytic efficiency.
5izdA Wild-type glyceraldehyde dehydrogenase from thermoplasma acidophilum in complex with NADP
23% identity, 72% coverage: 9:499/685 of query aligns to 4:474/494 of 5izdA
- active site: N149 (= N161), K172 (= K184), E247 (≠ N264), C281 (= C298), E381 (= E403), E458 (≠ P483)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: L145 (≠ I157), T146 (≠ D158), W148 (≠ Y160), K172 (= K184), P173 (= P185), S174 (≠ A186), S175 (≠ T187), R204 (≠ S217), G205 (≠ T218), G209 (≠ F222), D210 (= D223), G225 (= G235), S226 (= S236), T229 (= T239)
3hazA Crystal structure of bifunctional proline utilization a (puta) protein (see paper)
25% identity, 65% coverage: 67:508/685 of query aligns to 566:972/983 of 3hazA
- active site: N652 (= N161), K675 (= K184), E752 (= E259), C786 (= C298), E878 (= E403), A960 (≠ L492)
- binding nicotinamide-adenine-dinucleotide: I648 (= I157), S649 (≠ D158), P650 (≠ A159), W651 (≠ Y160), N652 (= N161), I657 (≠ G166), K675 (= K184), P676 (= P185), A677 (= A186), G708 (vs. gap), G711 (= G219), A712 (≠ D220), T726 (= T234), G727 (= G235), S728 (= S236), V731 (≠ T239), I735 (= I250), E752 (= E259), T753 (≠ A260), C786 (= C298), E878 (= E403), F880 (= F405), F948 (≠ H480)
Sites not aligning to the query:
- binding flavin-adenine dinucleotide: 272, 273, 306, 333, 335, 336, 337, 338, 339, 340, 358, 359, 360, 361, 364, 387, 388, 389, 390, 435, 460, 461
8skfA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (lattice translocation disorder)
26% identity, 74% coverage: 5:508/685 of query aligns to 11:487/497 of 8skfA
- binding calcium ion: T33 (≠ S27), I34 (≠ A28), D100 (≠ H91), V187 (≠ S188)
- binding nicotinamide-adenine-dinucleotide: I156 (= I157), G157 (≠ D158), A158 (= A159), W159 (≠ Y160), K183 (= K184), E186 (≠ T187), G216 (≠ T218), G220 (≠ F222), T235 (= T234), G236 (= G235), G237 (≠ S236), S240 (≠ T239), K243 (= K242), E259 (vs. gap), C293 (= C298), F396 (= F405)
8vr1A Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (ctp bound)
26% identity, 74% coverage: 5:508/685 of query aligns to 2:478/488 of 8vr1A
8vr0A Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (gmp bound)
26% identity, 74% coverage: 5:508/685 of query aligns to 2:478/488 of 8vr0A
8vqzA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (cmp bound)
26% identity, 74% coverage: 5:508/685 of query aligns to 2:478/488 of 8vqzA
Query Sequence
>GFF2758 FitnessBrowser__Marino:GFF2758
MEFPMSVLKSFIAGQWVGEKPAKALPSAVNGEIVAHTHDDTLDFKNAVEYGRKVGGKNLM
AMDFQERALALKAMALYLQEHKKELYALSMHTGSTKGDNGIDIDGGFGTLFSYASMGRRE
LPSGNVVHEGPVTPLGKNNHFAGTHILVPRGGVAVHIDAYNFPVWGMLEKFAPTFLAGMP
SIVKPATSTCYVTELAVRLMQESGALPEGSLQLIIGSTGDLFDHLEEQDVVTFTGSAATA
RKLRNHPNIINRSIPFNAEADSLNSAILAPDVTPEHEEFDVFVKEIRREMTAKAGQKCTA
IRRIFVPKDQVNAVCDKLKEQLSKITVGDPSVEGVRMGALASIDQLEDVKANIQELLKTS
ELVVGGEGNFKATGDGTEKGAFIEPHLLLCRNPENGCGAHDIEAFGPVATVIPYETIDDA
VELCSRGRGSLVTTLTTRDPAIAGRIAPLLAAFHGRLHLLDAEAAKESTGHGSPLPMLKH
GGPGRAGGGEELGGIRAVHHYLQRTAIQGSPSMLAAVTREYVRGADLIETDVHPFRRHFE
DLQINESLLTHRRTVTEADIVNFGCLSGDHFYMHFDEIAARDSQFGKRIAHGYFVLSAAA
GLFVYPGEGPVLANYGLDTLRFIEPVAPGDTIRARLTCKRKIDQGRTSPDGHPQGVVVWD
VQVHNQNDEMVASYDILTLVAKKPE
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory