Comparing GFF29 FitnessBrowser__Phaeo:GFF29 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
39% identity, 55% coverage: 49:156/196 of query aligns to 62:169/506 of A0A0H2ZQB9
Sites not aligning to the query:
B5Z7I3 Ergothioneine transport permease/ergothioneine binding protein EgtU from Helicobacter pylori (strain G27) (see paper)
29% identity, 62% coverage: 18:139/196 of query aligns to 69:190/553 of B5Z7I3
Sites not aligning to the query:
8wm8B Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with nitrate (see paper)
22% identity, 75% coverage: 38:184/196 of query aligns to 103:253/265 of 8wm8B
>GFF29 FitnessBrowser__Phaeo:GFF29
MTIYGATGSVLSDNQQAMLCILIGVPFGIWFGKSKRAYAVAEPVLDFMQTMPAFVYLIPI
IAFFGTGKPPGVLATLIFAMPPVIRLTALGMRGVPDATKEAAIAFGCSRRQLLFNVELPL
ALPSIMTGINQTILMSLSMVVIASLIGADGLGALILESLQYAAKGQGLLGGLAILLCAMV
IDRIAQGSYRRKIGKS
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory