Comparing GFF29 FitnessBrowser__psRCH2:GFF29 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3pgjA 2.49 angstrom resolution crystal structure of shikimate 5- dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate
59% identity, 100% coverage: 1:269/270 of query aligns to 1:270/272 of 3pgjA
Q9KVT3 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
59% identity, 100% coverage: 1:269/270 of query aligns to 5:274/278 of Q9KVT3
3sefA 2.4 angstrom resolution crystal structure of shikimate 5-dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate and NADPH
59% identity, 100% coverage: 1:269/270 of query aligns to 1:266/268 of 3sefA
3sefC 2.4 angstrom resolution crystal structure of shikimate 5-dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate and NADPH
54% identity, 100% coverage: 1:269/270 of query aligns to 1:243/244 of 3sefC
1nytA Shikimate dehydrogenase aroe complexed with NADP+ (see paper)
54% identity, 100% coverage: 1:270/270 of query aligns to 1:271/271 of 1nytA
P15770 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli (strain K12) (see paper)
54% identity, 100% coverage: 1:270/270 of query aligns to 1:271/272 of P15770
P43876 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see paper)
45% identity, 100% coverage: 1:269/270 of query aligns to 1:271/272 of P43876
1p77A Crystal structure of shikimate dehydrogenase (aroe) from haemophilus influenzae (see paper)
46% identity, 100% coverage: 1:269/270 of query aligns to 1:264/265 of 1p77A
Q5HNV1 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (see paper)
33% identity, 94% coverage: 3:257/270 of query aligns to 2:253/269 of Q5HNV1
3dooA Crystal structure of shikimate dehydrogenase from staphylococcus epidermidis complexed with shikimate (see paper)
33% identity, 94% coverage: 3:257/270 of query aligns to 2:244/258 of 3dooA
2hk9A Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
37% identity, 93% coverage: 4:253/270 of query aligns to 9:252/269 of 2hk9A
2hk9B Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
37% identity, 93% coverage: 4:253/270 of query aligns to 9:252/267 of 2hk9B
O67049 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus (strain VF5) (see paper)
36% identity, 93% coverage: 4:253/270 of query aligns to 9:252/269 of O67049
3phiA Shikimate 5-dehydrogenase (aroe) from helicobacter pylori in complex with shikimate and NADPH
37% identity, 93% coverage: 1:251/270 of query aligns to 3:242/259 of 3phiA
P56119 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
37% identity, 93% coverage: 1:251/270 of query aligns to 3:245/263 of P56119
4fosA Crystal structure of shikimate dehydrogenase (aroe) q237a mutant from helicobacter pylori in complex with shikimate
37% identity, 93% coverage: 1:251/270 of query aligns to 3:245/263 of 4fosA
2ev9B Crystal structure of shikimate 5-dehydrogenase (aroe) from thermus thermophilus hb8 in complex with NADP(h) and shikimate (see paper)
34% identity, 100% coverage: 1:269/270 of query aligns to 1:261/263 of 2ev9B
Q5SJF8 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
34% identity, 100% coverage: 1:269/270 of query aligns to 1:261/263 of Q5SJF8
2cy0A Crystal structure of shikimate 5-dehydrogenase (aroe) from thermus thermophilus hb8 in complex with NADP (see paper)
34% identity, 100% coverage: 1:269/270 of query aligns to 1:261/262 of 2cy0A
Q58484 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
33% identity, 94% coverage: 5:257/270 of query aligns to 10:268/282 of Q58484
>GFF29 FitnessBrowser__psRCH2:GFF29
MDRYGVFGNPIGHSKSPQIHALFAAQTGQVLRYEALLAPLDDFVGFARAFFQDGLGANVT
VPFKEQAYRMTDQLTERARRAGAVNTLKKLEDGHLLGDNTDGAGLVSDLLHAGVALRGRR
ILLLGAGGAVRGALEPLLAQRPAALIIANRTVSKAEQLAQEFAELGPLSASTFTDLAEPV
DLIINGTSASLGGELPPLADSLIQPGHTFCYDMMYAAKPTAFCQWAAALGADTRDGLGML
VEQAAEAFELWRGVRPDTAPVLAELRRQLS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory