SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF291 FitnessBrowser__WCS417:GFF291 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
35% identity, 97% coverage: 1:222/229 of query aligns to 3:215/215 of 4ymtC

query
sites
4ymtC
M
 
V
N
 
D
W
 
F
A
 
L
V
 
S
I
 
M
I
 
V
K
 
K
W
 
Y
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T
P
 
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K
 
L
L
 
F
A
 
I
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G
A
 
L
I
 
I
L
 
M
T
 
T
L
 
L
E
 
K
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T
A
 
F
I
 
L
A
 
A
V
 
V
I
 
T
A
 
I
G
 
G
L
 
V
L
 
L
L
 
M
A
 
G
I
 
L
P
 
F
L
 
I
G
 
A
I
 
L
A
 
M
R
 
K
S
 
M
S
 
S
R
 
S
R
 
I
W
 
K
Y
 
P
V
 
I
S
 
K
A
 
L
L
 
V
P
 
A
Y
 
S
A
 
S
Y
 
Y
I
 
I
F
 
E
F
 
V
F
 
I
R
 
R
G
 
G
T
 
T
P
|
P
L
|
L
L
 
L
V
 
V
Q
 
Q
L
 
L
F
 
L
L
 
L
V
 
I
Y
 
Y
Y
 
N
G
 
G
L
 
L
A
 
M
Q
 
Q
F
 
F
D
 
G
S
 
-
V
 
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E
 
-
S
 
-
F
 
-
M
 
-
W
 
-
P
 
-
Y
 
-
L
 
M
R
 
N
D
 
I
P
 
P
-
 
A
F
 
F
W
 
T
C
 
A
A
 
G
T
 
V
A
 
S
T
 
A
M
 
L
T
 
A
L
 
I
H
x
N
T
 
S
A
 
S
A
 
A
Y
|
Y
I
 
V
A
 
A
E
 
E
I
 
I
L
 
I
R
 
R
G
 
A
A
 
G
I
 
I
Q
 
Q
A
 
A
I
 
V
P
 
D
P
 
P
G
 
G
E
 
Q
I
 
N
E
 
E
A
 
A
A
 
A
R
 
R
A
 
S
L
 
L
G
 
G
M
 
M
S
 
T
K
 
H
P
 
A
K
 
M
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A
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M
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R
Y
 
Y
I
 
V
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I
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I
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Q
A
 
A
S
 
I
R
 
K
I
 
N
G
 
I
L
 
L
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P
A
 
A
Y
 
L
S
 
G
N
 
N
E
|
E
V
 
F
I
 
I
L
 
V
M
|
M
L
 
L
K
|
K
A
x
E
S
 
S
A
 
A
L
 
I
A
 
V
S
 
S
T
 
V
V
 
I
T
 
G
L
 
F
L
 
A
E
 
D
L
 
L
T
 
T
G
 
R
M
 
Q
A
 
A
R
 
D
T
 
I
I
 
I
I
 
Q
A
 
S
R
 
V
T
 
T
Y
 
Y
L
 
R
P
 
Y
V
 
F
E
 
E
I
 
P
F
 
Y
F
 
I
A
 
I
A
 
I
G
 
A
L
 
A
F
 
I
Y
 
Y
L
 
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M
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F
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E
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R
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R
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L
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
35% identity, 97% coverage: 1:221/229 of query aligns to 3:214/214 of 4ymwC

query
sites
4ymwC
M
 
V
N
 
D
W
 
F
A
 
L
V
 
S
I
 
M
I
 
V
K
 
K
W
 
Y
L
 
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P
 
P
K
 
L
L
 
F
A
 
I
Q
 
S
G
 
G
A
 
L
I
 
I
L
 
M
T
 
T
L
 
L
E
 
K
L
 
L
V
 
T
A
 
F
I
 
L
A
 
A
V
 
V
I
 
T
A
 
I
G
 
G
L
 
V
L
 
L
L
 
M
A
 
G
I
 
L
P
 
F
L
 
I
G
 
A
I
 
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A
 
M
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M
S
 
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S
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I
 
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P
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A
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A
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N
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A
 
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Y
I
 
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A
 
A
E
 
E
I
 
I
L
 
I
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A
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G
I
 
I
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M
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E
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L
 
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R
 
V
T
 
T
Y
 
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P
 
Y
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F
E
 
E
I
 
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F
 
I
A
 
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L

Query Sequence

>GFF291 FitnessBrowser__WCS417:GFF291
MNWAVIIKWLPKLAQGAILTLELVAIAVIAGLLLAIPLGIARSSRRWYVSALPYAYIFFF
RGTPLLVQLFLVYYGLAQFDSVRESFMWPYLRDPFWCATATMTLHTAAYIAEILRGAIQA
IPPGEIEAARALGMSKPKTLFYIILPRASRIGLPAYSNEVILMLKASALASTVTLLELTG
MARTIIARTYLPVEIFFAAGLFYLLMAYVLVRGFKLLERWLRVDACQGR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory