SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF2918 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

8rwgp 50S ribosomal protein L32
57% identity, 87% coverage: 10:86/89 of query aligns to 3:79/80 of 8rwgp

query
sites
8rwgp
R
|
R
T
 
T
L
 
L
V
 
T
G
 
G
K
 
R
V
 
V
V
 
V
S
 
S
D
 
D
K
 
K
R
x
M
A
x
D
K
|
K
T
 
T
V
 
V
T
 
T
V
 
V
L
 
L
V
 
I
E
 
E
R
|
R
R
 
R
V
 
V
K
 
K
H
 
H
E
 
P
L
x
I
Y
 
Y
D
 
G
K
|
K
I
x
Y
V
 
V
A
x
K
K
x
R
S
|
S
S
x
T
K
 
K
Y
x
L
H
|
H
A
 
A
H
 
H
D
 
D
E
 
E
K
 
S
S
 
N
E
 
Q
Y
 
C
K
 
R
M
 
I
G
 
G
D
 
D
V
 
L
I
 
V
E
 
T
I
 
I
T
 
R
E
|
E
S
 
T
R
|
R
P
|
P
L
|
L
S
x
A
K
|
K
T
|
T
K
|
K
N
x
A
W
|
W
V
 
T
A
 
L
T
 
V
R
 
D
L
 
I
V
 
V
Q
 
E
K
 
R
A
 
A

3j9zSQ 30S ribosomal protein S13 (see paper)
54% identity, 89% coverage: 10:88/89 of query aligns to 5:83/83 of 3j9zSQ

query
sites
3j9zSQ
R
 
R
T
 
T
L
 
L
V
 
Q
G
 
G
K
 
R
V
 
V
V
 
V
S
|
S
D
 
D
K
|
K
R
x
M
A
x
E
K
 
K
T
x
S
V
 
I
T
 
V
V
 
V
L
 
A
V
 
I
E
 
E
R
|
R
R
 
F
V
 
V
K
 
K
H
 
H
E
 
P
L
x
I
Y
 
Y
D
 
G
K
|
K
I
 
F
V
 
I
A
x
K
K
x
R
S
x
T
S
x
T
K
|
K
Y
 
L
H
|
H
A
 
V
H
 
H
D
 
D
E
 
E
K
 
N
S
 
N
E
 
E
Y
 
C
K
 
G
M
 
I
G
 
G
D
 
D
V
 
V
I
 
V
E
 
E
I
 
I
T
 
R
E
 
E
S
 
C
R
|
R
P
|
P
L
 
L
S
|
S
K
|
K
T
 
T
K
|
K
N
 
S
W
 
W
V
 
T
A
 
L
T
 
V
R
 
R
L
 
V
V
 
V
Q
 
E
K
 
K
A
 
A
A
 
V
L
 
L

Sites not aligning to the query:

5no2Q Rsga-gdpnp bound to the 30s ribosomal subunit (rsga assembly intermediate) (see paper)
54% identity, 88% coverage: 10:87/89 of query aligns to 3:80/80 of 5no2Q

query
sites
5no2Q
R
|
R
T
 
T
L
 
L
V
 
Q
G
 
G
K
 
R
V
 
V
V
 
V
S
|
S
D
 
D
K
 
K
R
x
M
A
 
E
K
|
K
T
 
S
V
 
I
T
 
V
V
 
V
L
 
A
V
 
I
E
 
E
R
|
R
R
 
F
V
 
V
K
 
K
H
 
H
E
 
P
L
 
I
Y
|
Y
D
 
G
K
|
K
I
x
F
V
 
I
A
x
K
K
x
R
S
x
T
S
x
T
K
 
K
Y
x
L
H
|
H
A
 
V
H
 
H
D
 
D
E
 
E
K
 
N
S
 
N
E
 
E
Y
 
C
K
 
G
M
 
I
G
 
G
D
 
D
V
 
V
I
 
V
E
 
E
I
 
I
T
 
R
E
|
E
S
 
C
R
|
R
P
|
P
L
|
L
S
|
S
K
|
K
T
|
T
K
 
K
N
x
S
W
|
W
V
 
T
A
 
L
T
 
V
R
 
R
L
 
V
V
 
V
Q
 
E
K
 
K
A
 
A
A
 
V

8ayeQ 30S ribosomal protein S17 (see paper)
55% identity, 87% coverage: 10:86/89 of query aligns to 3:79/79 of 8ayeQ

query
sites
8ayeQ
R
|
R
T
 
T
L
 
L
V
 
Q
G
 
G
K
 
R
V
 
V
V
 
V
S
|
S
D
 
D
K
|
K
R
x
M
A
x
E
K
 
K
T
x
S
V
 
I
T
 
V
V
 
V
L
 
A
V
 
I
E
 
E
R
|
R
R
 
F
V
 
V
K
 
K
H
 
H
E
 
P
L
x
I
Y
 
Y
D
 
G
K
|
K
I
x
F
V
 
I
A
 
K
K
x
R
S
x
T
S
x
T
K
|
K
Y
x
L
H
|
H
A
 
V
H
 
H
D
 
D
E
 
E
K
 
N
S
 
N
E
 
E
Y
 
C
K
 
G
M
 
I
G
 
G
D
 
D
V
 
V
I
 
V
E
 
E
I
 
I
T
 
R
E
|
E
S
 
C
R
|
R
P
|
P
L
|
L
S
|
S
K
|
K
T
|
T
K
|
K
N
x
S
W
|
W
V
 
T
A
 
L
T
 
V
R
 
R
L
 
V
V
 
V
Q
 
E
K
 
K
A
 
A

6v39q 30S ribosomal protein S18 (see paper)
57% identity, 87% coverage: 10:86/89 of query aligns to 4:80/80 of 6v39q

query
sites
6v39q
R
|
R
T
 
T
L
 
L
V
 
T
G
 
G
K
 
K
V
 
V
V
 
V
S
|
S
D
 
D
K
|
K
R
x
M
A
x
D
K
 
K
T
 
S
V
 
I
T
 
V
V
 
V
L
 
L
V
 
I
E
 
E
R
 
R
R
 
R
V
 
V
K
 
Q
H
 
H
E
 
P
L
|
L
Y
 
Y
D
 
G
K
 
K
I
 
S
V
 
I
A
x
R
K
x
R
S
|
S
S
 
T
K
|
K
Y
 
L
H
 
H
A
 
A
H
 
H
D
 
D
E
 
E
K
 
N
S
 
N
E
 
V
Y
 
A
K
 
K
M
 
I
G
 
G
D
 
D
V
 
V
I
 
V
E
 
T
I
 
I
T
 
K
E
|
E
S
 
S
R
|
R
P
|
P
L
 
I
S
|
S
K
|
K
T
|
T
K
|
K
N
 
A
W
 
W
V
 
T
A
 
L
T
 
V
R
 
E
L
 
V
V
 
V
Q
 
E
K
 
A
A
 
A

5a9zBU of Thermous thermophilus ribosome bound to BipA-GDPCP (see paper)
55% identity, 90% coverage: 9:88/89 of query aligns to 2:81/104 of 5a9zBU

query
sites
5a9zBU
K
|
K
R
 
K
T
 
V
L
 
L
V
 
T
G
 
G
K
 
V
V
 
V
V
 
V
S
 
S
D
 
D
K
|
K
R
x
M
A
x
Q
K
 
K
T
|
T
V
 
V
T
 
T
V
 
V
L
 
L
V
 
V
E
 
E
R
|
R
R
 
Q
V
 
F
K
 
P
H
 
H
E
 
P
L
|
L
Y
|
Y
D
 
G
K
|
K
I
 
V
V
 
I
A
 
K
K
x
R
S
|
S
S
x
K
K
|
K
Y
|
Y
H
 
L
A
 
A
H
 
H
D
 
D
E
 
P
K
 
E
S
 
E
E
 
K
Y
 
Y
K
 
K
M
 
L
G
 
G
D
 
D
V
 
V
I
 
V
E
 
E
I
 
I
T
 
I
E
|
E
S
 
S
R
|
R
P
|
P
L
x
I
S
|
S
K
|
K
T
x
R
K
|
K
N
x
R
W
x
F
V
x
R
A
 
V
T
 
L
R
 
R
L
 
L
V
 
V
Q
 
E
K
 
S
A
 
G
A
 
R
L
 
M

Sites not aligning to the query:

1i94Q Crystal structures of the small ribosomal subunit with tetracycline, edeine and if3 (see paper)
55% identity, 90% coverage: 9:88/89 of query aligns to 2:81/104 of 1i94Q

query
sites
1i94Q
K
 
K
R
 
K
T
 
V
L
 
L
V
 
T
G
 
G
K
 
V
V
 
V
V
 
V
S
 
S
D
 
D
K
|
K
R
 
M
A
x
Q
K
 
K
T
 
T
V
 
V
T
 
T
V
 
V
L
 
L
V
 
V
E
 
E
R
|
R
R
 
Q
V
 
F
K
 
P
H
 
H
E
 
P
L
|
L
Y
 
Y
D
 
G
K
 
K
I
 
V
V
 
I
A
x
K
K
x
R
S
|
S
S
 
K
K
 
K
Y
 
Y
H
 
L
A
 
A
H
 
H
D
 
D
E
 
P
K
 
E
S
 
E
E
 
R
Y
 
Y
K
 
K
M
 
V
G
 
G
D
 
D
V
 
V
I
 
V
E
 
E
I
 
I
T
 
I
E
 
E
S
 
A
R
|
R
P
|
P
L
x
I
S
|
S
K
|
K
T
x
R
K
|
K
N
 
R
W
 
F
V
 
R
A
 
V
T
 
L
R
 
R
L
 
L
V
 
V
Q
 
E
K
 
E
A
 
G
A
 
R
L
 
L

Sites not aligning to the query:

8crxQ 30S ribosomal protein S17 (see paper)
49% identity, 96% coverage: 2:86/89 of query aligns to 5:89/90 of 8crxQ

query
sites
8crxQ
T
 
T
E
 
A
A
 
E
K
x
R
T
 
T
S
x
T
L
x
R
K
x
R
R
x
K
T
 
V
L
 
R
V
 
E
G
 
G
K
 
L
V
 
V
V
 
V
S
|
S
D
 
D
K
|
K
R
x
M
A
x
N
K
|
K
T
|
T
V
 
I
T
 
T
V
 
V
L
 
M
V
 
V
E
 
E
R
 
D
R
 
R
V
 
V
K
 
K
H
 
H
E
 
P
L
 
L
Y
 
Y
D
 
G
K
|
K
I
 
V
V
 
M
A
 
T
K
 
K
S
 
S
S
 
V
K
x
R
Y
 
L
H
x
K
A
 
A
H
 
H
D
 
D
E
 
E
K
 
N
S
 
N
E
 
E
Y
 
A
K
 
G
M
 
M
G
 
G
D
 
D
V
 
R
I
 
V
E
 
R
I
 
I
T
x
M
E
|
E
S
x
T
R
|
R
P
|
P
L
 
L
S
|
S
K
x
A
T
|
T
K
|
K
N
x
R
W
 
W
V
x
R
A
 
L
T
 
V
R
 
E
L
 
I
V
 
I
Q
 
E
K
 
K
A
 
A

Sites not aligning to the query:

8rd8QZ Small ribosomal subunit protein uS5 (see paper)
50% identity, 83% coverage: 12:85/89 of query aligns to 4:77/79 of 8rd8QZ

query
sites
8rd8QZ
L
 
L
V
 
T
G
 
G
K
 
R
V
 
V
V
 
V
S
|
S
D
 
D
K
 
K
R
x
M
A
x
D
K
|
K
T
x
S
V
 
I
T
 
T
V
 
V
L
 
L
V
 
I
E
 
E
R
 
R
R
 
L
V
 
V
K
 
R
H
 
H
E
 
P
L
|
L
Y
 
Y
D
 
G
K
|
K
I
x
Q
V
 
L
A
x
R
K
x
R
S
|
S
S
x
T
K
|
K
Y
 
I
H
x
K
A
 
A
H
 
H
D
 
D
E
 
E
K
 
N
S
 
N
E
 
V
Y
 
C
K
 
Q
M
 
Q
G
 
G
D
 
D
V
 
L
I
 
V
E
 
R
I
 
I
T
 
K
E
|
E
S
 
T
R
|
R
P
|
P
L
x
I
S
|
S
K
|
K
T
|
T
K
|
K
N
 
A
W
|
W
V
 
T
A
 
L
T
 
V
R
 
D
L
 
V
V
 
V
Q
 
E
K
 
K

7bgdq Staphylococcus aureus 30s ribosomal subunit in presence of spermidine (body only)
47% identity, 91% coverage: 9:89/89 of query aligns to 6:86/86 of 7bgdq

query
sites
7bgdq
K
x
R
R
x
K
T
 
V
L
x
Y
V
 
V
G
 
G
K
 
K
V
 
V
V
 
V
S
 
S
D
 
D
K
|
K
R
x
M
A
x
D
K
|
K
T
|
T
V
 
I
T
 
T
V
 
V
L
 
L
V
 
V
E
 
E
R
 
T
R
x
Y
V
x
K
K
x
T
H
 
H
E
 
K
L
 
L
Y
|
Y
D
 
G
K
|
K
I
 
R
V
 
V
A
x
K
K
x
Y
S
|
S
S
x
K
K
|
K
Y
|
Y
H
x
K
A
 
T
H
 
H
D
 
D
E
 
E
K
 
N
S
 
N
E
 
S
Y
 
A
K
 
K
M
 
L
G
 
G
D
 
D
V
 
I
I
 
V
E
 
K
I
 
I
T
x
Q
E
|
E
S
x
T
R
|
R
P
|
P
L
|
L
S
|
S
K
x
A
T
 
T
K
|
K
N
x
R
W
 
F
V
x
R
A
 
L
T
 
V
R
 
E
L
 
I
V
 
V
Q
 
E
K
 
E
A
 
S
A
 
V
L
 
I
V
 
I

Sites not aligning to the query:

3j9wAQ 30S ribosomal protein uS9 (see paper)
49% identity, 85% coverage: 14:89/89 of query aligns to 11:86/86 of 3j9wAQ

query
sites
3j9wAQ
G
 
G
K
 
R
V
 
V
V
 
V
S
 
S
D
 
D
K
 
K
R
 
M
A
 
D
K
 
K
T
 
T
V
 
I
T
 
T
V
 
V
L
 
V
V
 
V
E
 
E
R
 
T
R
 
Y
V
 
K
K
|
K
H
 
H
E
 
T
L
 
L
Y
 
Y
D
 
G
K
 
K
I
 
R
V
 
V
A
 
K
K
x
Y
S
|
S
S
 
K
K
 
K
Y
 
F
H
 
K
A
 
A
H
 
H
D
 
D
E
 
E
K
 
N
S
 
N
E
 
Q
Y
 
A
K
 
K
M
 
I
G
 
G
D
 
D
V
 
I
I
 
V
E
 
K
I
 
I
T
 
M
E
 
E
S
 
T
R
 
R
P
|
P
L
|
L
S
|
S
K
x
A
T
 
T
K
 
K
N
 
R
W
 
F
V
 
R
A
 
L
T
 
V
R
 
E
L
 
V
V
 
V
Q
 
E
K
 
E
A
 
A
A
 
V
L
 
I
V
 
I

5myjAQ of 70S ribosome from Lactococcus lactis (see paper)
46% identity, 85% coverage: 14:89/89 of query aligns to 7:82/82 of 5myjAQ

query
sites
5myjAQ
G
 
G
K
 
R
V
 
V
V
 
V
S
|
S
D
 
D
K
|
K
R
x
M
A
x
D
K
|
K
T
 
T
V
 
I
T
 
T
V
 
V
L
 
V
V
 
V
E
 
E
R
 
T
R
 
K
V
x
R
K
 
N
H
 
H
E
 
P
L
x
V
Y
 
Y
D
 
G
K
 
K
I
x
R
V
 
I
A
 
N
K
 
Y
S
 
S
S
x
K
K
 
K
Y
|
Y
H
x
K
A
 
A
H
 
H
D
 
D
E
|
E
K
 
N
S
 
N
E
 
S
Y
 
A
K
 
K
M
 
T
G
 
G
D
 
D
V
 
I
I
 
V
E
 
R
I
 
I
T
x
M
E
|
E
S
x
T
R
|
R
P
|
P
L
|
L
S
|
S
K
|
K
T
x
D
K
|
K
N
x
H
W
 
F
V
x
R
A
 
L
T
x
V
R
 
E
L
 
I
V
 
V
Q
 
E
K
 
E
A
 
A
A
 
V
L
 
I
V
 
I

Sites not aligning to the query:

A0QSE0 Small ribosomal subunit protein uS17; 30S ribosomal protein S17 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
45% identity, 88% coverage: 9:86/89 of query aligns to 20:97/98 of A0QSE0

query
sites
A0QSE0
K
 
R
R
 
K
T
 
T
L
 
A
V
 
I
G
 
G
K
 
Y
V
 
V
V
 
V
S
 
S
D
 
D
K
 
K
R
 
M
A
 
Q
K
 
K
T
 
T
V
 
I
T
 
V
V
 
V
L
 
E
V
 
L
E
 
E
R
 
D
R
 
R
V
 
K
K
 
S
H
 
H
E
 
P
L
 
L
Y
 
Y
D
 
G
K
 
K
I
 
I
V
 
I
A
 
R
K
 
T
S
 
T
S
 
K
K
 
K
Y
 
V
H
 
K
A
 
A
H
 
H
D
 
D
E
 
E
K
 
N
S
 
G
E
 
E
Y
 
A
K
 
G
M
 
I
G
 
G
D
 
D
V
 
R
I
 
V
E
 
S
I
 
L
T
 
M
E
 
E
S
 
T
R
 
R
P
 
P
L
 
L
S
 
S
K
 
A
T
 
T
K
 
K
N
 
R
W
 
W
V
 
R
A
 
L
T
 
V
R
 
E
L
 
I
V
 
L
Q
 
E
K
|
K
A
 
A

6dzi5 50S ribosomal protein L29 (see paper)
45% identity, 88% coverage: 9:86/89 of query aligns to 17:94/94 of 6dzi5

query
sites
6dzi5
K
x
R
R
 
K
T
 
T
L
 
A
V
 
I
G
 
G
K
 
Y
V
 
V
V
 
V
S
 
S
D
 
D
K
|
K
R
x
M
A
x
Q
K
 
K
T
 
T
V
 
I
T
 
V
V
 
V
L
 
E
V
 
L
E
 
E
R
 
D
R
|
R
V
x
K
K
 
S
H
 
H
E
 
P
L
 
L
Y
|
Y
D
 
G
K
 
K
I
 
I
V
 
I
A
 
R
K
 
T
S
x
T
S
 
K
K
|
K
Y
 
V
H
x
K
A
 
A
H
 
H
D
 
D
E
 
E
K
 
N
S
 
G
E
 
E
Y
 
A
K
 
G
M
 
I
G
 
G
D
 
D
V
 
R
I
 
V
E
 
S
I
 
L
T
x
M
E
 
E
S
x
T
R
|
R
P
|
P
L
|
L
S
|
S
K
x
A
T
|
T
K
|
K
N
x
R
W
 
W
V
x
R
A
 
L
T
 
V
R
 
E
L
 
I
V
 
L
Q
 
E
K
 
K
A
 
A

Sites not aligning to the query:

7mscq 70SIC in complex with MtbEttA at Pre_R0 state (see paper)
45% identity, 88% coverage: 9:86/89 of query aligns to 17:94/95 of 7mscq

query
sites
7mscq
K
x
R
R
 
K
T
 
T
L
 
R
V
 
I
G
 
G
K
 
Y
V
 
V
V
 
V
S
|
S
D
 
D
K
|
K
R
x
M
A
x
Q
K
 
K
T
|
T
V
 
I
T
 
V
V
 
V
L
 
E
V
 
L
E
 
E
R
 
D
R
 
R
V
x
M
K
 
R
H
 
H
E
 
P
L
 
L
Y
|
Y
D
 
G
K
|
K
I
 
I
V
 
I
A
 
R
K
 
T
S
 
T
S
x
K
K
|
K
Y
 
V
H
x
K
A
 
A
H
 
H
D
 
D
E
 
E
K
 
D
S
 
S
E
 
V
Y
 
A
K
 
G
M
 
I
G
 
G
D
 
D
V
 
R
I
 
V
E
 
S
I
 
L
T
x
M
E
 
E
S
 
T
R
|
R
P
|
P
L
 
L
S
|
S
K
x
A
T
|
T
K
|
K
N
x
R
W
 
W
V
x
R
A
 
L
T
 
V
R
 
E
L
 
I
V
 
L
Q
 
E
K
 
K
A
 
A

Sites not aligning to the query:

6xywBp At4g35490 (see paper)
39% identity, 87% coverage: 12:88/89 of query aligns to 1:77/78 of 6xywBp

query
sites
6xywBp
L
 
V
V
 
I
G
 
G
K
 
T
V
 
V
V
 
V
S
|
S
D
 
N
K
 
K
R
x
M
A
x
Q
K
 
K
T
x
S
V
 
V
T
 
V
V
 
V
L
 
A
V
 
V
E
 
D
R
|
R
R
 
L
V
x
F
K
 
H
H
 
N
E
 
K
L
x
I
Y
 
Y
D
 
N
K
 
R
I
 
Y
V
 
V
A
x
K
K
x
R
S
x
T
S
|
S
K
 
K
Y
 
F
H
 
M
A
 
A
H
 
H
D
 
D
E
 
D
K
 
K
S
 
D
E
 
A
Y
 
C
K
 
N
M
 
I
G
 
G
D
 
D
V
 
R
I
 
V
E
 
K
I
 
L
T
 
D
E
 
P
S
 
S
R
|
R
P
|
P
L
 
L
S
|
S
K
|
K
T
 
N
K
 
K
N
x
H
W
 
W
V
 
I
A
 
V
T
 
A
R
 
E
L
 
I
V
 
I
Q
 
K
K
 
K
A
 
A
A
 
R
L
 
I

6o8wq 30S ribosomal protein S10 (see paper)
48% identity, 82% coverage: 14:86/89 of query aligns to 10:82/83 of 6o8wq

query
sites
6o8wq
G
 
G
K
 
R
V
 
V
V
 
V
S
 
S
D
 
D
K
|
K
R
x
M
A
x
D
K
|
K
T
|
T
V
 
I
T
 
T
V
 
V
L
 
V
V
 
V
E
 
E
R
 
T
R
 
K
V
 
K
K
 
N
H
 
H
E
 
P
L
 
I
Y
|
Y
D
 
G
K
|
K
I
x
R
V
 
M
A
x
K
K
x
Y
S
 
S
S
x
K
K
|
K
Y
 
Y
H
x
K
A
 
A
H
 
H
D
 
D
E
 
E
K
 
N
S
 
N
E
 
T
Y
 
A
K
 
K
M
 
V
G
 
G
D
 
D
V
 
I
I
 
V
E
 
K
I
 
I
T
x
M
E
 
E
S
x
T
R
|
R
P
|
P
L
|
L
S
|
S
K
x
A
T
 
T
K
|
K
N
x
R
W
 
F
V
 
R
A
 
L
T
 
L
R
 
E
L
 
V
V
 
V
Q
 
E
K
 
E
A
 
A

Sites not aligning to the query:

8uu6q Large ribosomal subunit protein uL24 (see paper)
52% identity, 78% coverage: 9:77/89 of query aligns to 4:72/80 of 8uu6q

query
sites
8uu6q
K
x
R
R
 
K
T
 
V
L
 
Y
V
 
T
G
 
G
K
 
R
V
 
V
V
 
V
S
 
S
D
 
D
K
|
K
R
 
M
A
x
D
K
 
K
T
 
T
V
 
I
T
 
T
V
 
V
L
 
V
V
 
V
E
 
E
R
 
T
R
 
Y
V
 
K
K
 
K
H
 
H
E
 
G
L
 
L
Y
 
Y
D
 
G
K
 
K
I
x
R
V
 
V
A
x
K
K
 
Y
S
|
S
S
 
K
K
|
K
Y
 
F
H
x
K
A
 
A
H
 
H
D
 
D
E
 
E
K
 
N
S
 
N
E
 
I
Y
 
A
K
 
K
M
 
T
G
 
G
D
 
D
V
 
V
I
 
V
E
 
R
I
 
I
T
 
S
E
 
E
S
 
T
R
|
R
P
|
P
L
 
L
S
|
S
K
 
A
T
|
T
K
|
K
N
x
H
W
 
F

Sites not aligning to the query:

8uu7q Small ribosomal subunit protein uS17 (see paper)
52% identity, 78% coverage: 9:77/89 of query aligns to 5:73/81 of 8uu7q

query
sites
8uu7q
K
x
R
R
 
K
T
 
V
L
 
Y
V
 
T
G
 
G
K
 
R
V
 
V
V
 
V
S
 
S
D
 
D
K
 
K
R
x
M
A
x
D
K
|
K
T
 
T
V
 
I
T
 
T
V
 
V
L
 
V
V
 
V
E
 
E
R
 
T
R
 
Y
V
 
K
K
|
K
H
 
H
E
 
G
L
|
L
Y
 
Y
D
 
G
K
 
K
I
x
R
V
 
V
A
 
K
K
 
Y
S
|
S
S
x
K
K
|
K
Y
 
F
H
 
K
A
 
A
H
 
H
D
 
D
E
 
E
K
 
N
S
 
N
E
 
I
Y
 
A
K
 
K
M
 
T
G
 
G
D
 
D
V
 
V
I
 
V
E
 
R
I
 
I
T
 
S
E
|
E
S
x
T
R
|
R
P
|
P
L
 
L
S
|
S
K
x
A
T
|
T
K
 
K
N
x
H
W
 
F

Sites not aligning to the query:

8p7yP 50S ribosomal protein L31 (see paper)
45% identity, 92% coverage: 5:86/89 of query aligns to 2:84/85 of 8p7yP

query
sites
8p7yP
K
 
K
T
x
R
S
 
N
L
 
Q
K
x
R
R
 
K
T
 
V
L
 
L
V
 
I
G
 
G
K
 
I
V
 
V
V
 
K
S
 
S
D
 
T
K
 
K
R
x
N
A
 
A
K
|
K
T
 
T
V
 
A
T
 
T
V
 
V
L
 
Q
V
 
V
E
 
E
R
 
S
R
 
R
V
 
F
K
 
K
H
 
H
E
 
P
L
 
L
Y
 
Y
D
 
H
K
 
K
I
 
S
V
 
V
A
x
V
K
x
R
S
x
H
S
x
K
K
|
K
Y
|
Y
H
x
Q
A
 
A
H
|
H
D
 
N
E
 
E
K
 
G
S
 
E
E
 
V
Y
 
L
-
 
A
K
 
K
M
 
D
G
 
G
D
 
D
V
 
K
I
 
V
E
 
Q
I
 
I
T
 
V
E
 
E
S
x
T
R
|
R
P
|
P
L
|
L
S
|
S
K
x
A
T
 
T
K
 
K
N
x
R
W
 
F
V
x
R
A
 
I
T
 
A
R
 
K
L
 
I
V
 
I
Q
 
E
K
 
R
A
 
A

Query Sequence

>GFF2918
MTEAKTSLKRTLVGKVVSDKRAKTVTVLVERRVKHELYDKIVAKSSKYHAHDEKSEYKMG
DVIEITESRPLSKTKNWVATRLVQKAALV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory