SitesBLAST – Find functional sites

 

SitesBLAST

Comparing GFF292 FitnessBrowser__WCS417:GFF292 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
35% identity, 93% coverage: 8:221/231 of query aligns to 11:213/215 of 4ymtC

query
sites
4ymtC
F
 
Y
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P
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F
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I
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G
A
 
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I
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M
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K
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T
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F
T
 
L
A
 
A
L
 
V
C
 
T
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I
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G
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V
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L
L
 
M
G
 
G
L
 
L
A
 
F
G
 
I
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A
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L
A
 
M
K
 
K
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M
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S
P
 
S
Y
 
I
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K
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P
L
 
I
Q
 
K
W
 
L
L
 
V
G
 
A
G
 
S
A
 
S
Y
 
Y
S
 
I
T
 
E
I
 
V
V
 
I
R
 
R
G
 
G
I
 
T
P
|
P
E
x
L
L
 
L
L
 
V
W
 
Q
V
 
L
L
 
L
L
 
L
I
 
I
Y
 
Y
F
 
N
G
 
G
T
 
-
V
 
-
N
 
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L
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M
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Q
A
 
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L
 
-
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-
E
 
-
F
 
-
F
 
F
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G
N
 
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P
 
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D
 
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M
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N
L
 
I
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P
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A
F
 
F
A
 
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A
G
 
G
V
 
V
I
 
S
A
 
A
L
 
L
G
 
A
L
 
I
C
x
N
F
 
S
G
 
S
A
 
A
Y
|
Y
A
 
V
T
 
A
E
 
E
V
 
I
F
 
I
R
 
R
G
 
A
A
 
G
I
 
I
L
 
Q
A
 
A
I
 
V
P
 
D
K
 
P
G
 
G
H
 
Q
R
 
N
E
 
E
A
 
A
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A
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R
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S
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L
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G
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M
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K
 
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A
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M
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A
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Y
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A
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K
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A
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L
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G
N
 
N
L
x
E
F
 
F
M
 
I
I
 
V
L
x
M
M
 
L
K
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K
D
x
E
T
 
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A
 
A
L
 
I
V
 
V
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S
V
 
V
I
 
I
G
 
G
L
 
F
E
 
A
E
 
D
I
 
L
M
 
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R
H
 
Q
A
 
A
Q
 
D
I
 
I
G
 
I
V
 
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V
T
 
T
K
 
Y
Q
 
R
P
 
Y
F
 
F
T
 
E
F
 
P
F
 
Y
M
 
I
V
 
I
A
 
I
A
 
A
F
 
A
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I
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L
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F
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K
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L
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L
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S
F
 
L
L
 
F
E
 
E
K
 
R
R
 
R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
35% identity, 93% coverage: 8:221/231 of query aligns to 11:213/214 of 4ymwC

query
sites
4ymwC
F
 
Y
G
 
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P
A
 
L
L
 
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G
 
G
A
 
L
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M
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T
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L
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K
L
 
L
A
 
T
L
 
F
T
 
L
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A
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V
C
 
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I
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G
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L
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G
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L
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A
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A
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A
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I
C
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A
E
 
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A
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G
I
 
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A
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A
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T
K
 
Y
Q
 
R
P
 
Y
F
 
F
T
 
E
F
 
P
F
 
Y
M
 
I
V
 
I
A
 
I
A
 
A
F
 
A
M
 
I
Y
 
Y
L
 
F
G
 
V
L
 
M
T
 
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K
G
 
L
M
 
L
H
 
S
F
 
L
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F
E
 
E
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R
R
 
R

Query Sequence

>GFF292 FitnessBrowser__WCS417:GFF292
MNFDLYGFGPALAAGALMTVKLALTALCLGLVLGLAGALAKTSPYKPLQWLGGAYSTIVR
GIPELLWVLLIYFGTVNLMRALGEFFGNPDLSLSAFAAGVIALGLCFGAYATEVFRGAIL
AIPKGHREAGIALGLSKFRIFTRLIMPQMWRIALPGLGNLFMILMKDTALVSVIGLEEIM
RHAQIGVTVTKQPFTFFMVAAFMYLGLTVLAMTGMHFLEKRAARGFARSTQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory